RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GGT1P19440 569 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CYP2B6P20813 491 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 WARSP23381 471 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ATP5A1P25705 553 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 STOMP27105 288 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 LAP3P28838 519 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SDC4P31431 198 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CEACAM6P40199 344 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CD79BP40259 229 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CSKP41240 450 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MAGEA2P43356 314 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RABIFP47224 123 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RPL29P47914 159 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ATP5OP48047 213 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CAMLGP49069 296 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 DHPSP49366 369 aaPredicted RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RGS6P49758 472 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SGSHP51688 502 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 AKR1D1P51857 326 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ARFIP1P53367 373 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 APOC4P55056 127 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SLC26A5P58743 744 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ACTR1AP61163 376 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SNRPD2P62316 118 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 PPP3R1P63098 170 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 HERVK_113P63132 956 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 DYNLL1P63167 89 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 IL5RAQ01344 420 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OGDHQ02218 1023 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ECH1Q13011 328 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CUL2Q13617 745 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 KIR2DS1Q14954 304 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TRAM2Q15035 370 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 PON3Q15166 354 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 LGALSLQ3ZCW2 172 aaPredicted RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CDKL4Q5MAI5 379 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NKAIN2Q5VXU1 208 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OR4F3Q6IEY1 312 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OR6B2Q6IFH4 312 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 DNAJC24Q6P3W2 148 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SCYL2Q6P3W7 929 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 UQCC3Q6UW78 93 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ALKAL1Q6UXT8 129 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 WDR88Q6ZMY6 472 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 DPY19L2P2Q6ZN68 376 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 DNM1P46Q6ZS02 220 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM135Q86UB9 458 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SLC22A9Q8IVM8 553 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 C12orf45Q8N5I9 185 aaPredicted RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ATPAF2Q8N5M1 289 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM252Q8N6L7 170 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 C19orf18Q8NEA5 215 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 DENND6BQ8NEG7 585 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TRPV1Q8NER1 839 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OR4F6Q8NGB9 312 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OR8J3Q8NGG0 315 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OR8D4Q8NGM9 314 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OR2L8Q8NGY9 312 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CLHC1Q8NHS4 586 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NANPQ8TBE9 248 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF596Q8TC21 504 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 FAM110BQ8TC76 370 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF675Q8TD23 568 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 GLYATL2Q8WU03 294 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ASZ1Q8WWH4 475 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SELENOMQ8WWX9 145 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF606Q8WXB4 792 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM37Q8WXS4 190 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ARNTL2Q8WYA1 636 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SLC25A36Q96CQ1 311 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MRPS24Q96EL2 167 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 FAM210BQ96KR6 192 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 C7orf34Q96L11 122 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 Q96MT0 163 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RNF157Q96PX1 679 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 GPR22Q99680 433 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 C11orf70Q9BRQ4 267 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 C2orf88Q9BSF0 95 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TAPBPLQ9BX59 468 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NKX6-2Q9C056 277 aaPredicted RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ZYG11BQ9C0D3 744 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ACTR6Q9GZN1 396 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MED28Q9H204 178 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RIBC2Q9H4K1 309 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ZDHHC11Q9H8X9 412 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RNF122Q9H9V4 155 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SH2D2AQ9NP31 389 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NGBQ9NPG2 151 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 C19orf12Q9NSK7 152 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CNOT2Q9NZN8 540 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MED11Q9P086 117 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CCDC167Q9P0B6 97 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MYEF2Q9P2K5 600 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SPRR3Q9UBC9 169 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 COPS7AQ9UBW8 275 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TBX21Q9UL17 535 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NUBP2Q9Y5Y2 271 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SCN11AQ9UI33 1791 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CACNA1SQ13698 1873 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 FER1L6Q2WGJ9 1857 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms