RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 C1QTNF5Q9BXJ0 243 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 NEK6Q9HC98 313 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 RANGRFQ9HD47 186 aaPredicted RBP22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 GLRX2Q9NS18 164 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 CEP295Q9C0D2 2601 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 TMEM8BA6NDV4 472 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 XRCC2O43543 280 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 PRAF2O60831 178 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 PEX14O75381 377 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 C9orf135Q5VTT2 229 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 FGD2Q7Z6J4 655 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 DPPA2Q7Z7J5 298 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 CPEB3Q8NE35 698 aaKnown RBP22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 OR4C16Q8NGL9 310 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 SPSB1Q96BD6 273 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 LPAR5Q9H1C0 372 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 B3GNT2Q9NY97 397 aa22.92■■□□□ 1.26
CCDC88C-205ENST00000553403 ZNF407Q9C0G0 2248 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 AQP7O14520 342 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 CDC14BO60729 498 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 NDUFB6O95139 128 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 NAT2P11245 290 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 ACKR3P25106 362 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 ARR3P36575 388 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 FOXG1P55316 489 aaPredicted RBP22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 TAS2R19P59542 299 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 CD83Q01151 205 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 CRIP3Q6Q6R5 217 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 COLCA1Q6ZS62 124 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 OR10R2Q8NGX6 335 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 GMPPAQ96IJ6 420 aaPredicted RBP22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 MED28Q9H204 178 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 OR51J1Q9H342 316 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 ING3Q9NXR8 418 aa22.91■■□□□ 1.26
CCDC88C-205ENST00000553403 A0A096LPE4 126 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 A0A1W2PPZ6 126 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 WIPF3A6NGB9 483 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 PTGFRP43088 359 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 LINC00303Q3SY05 128 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 Q6ZTK2 550 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 GIMAP1Q8WWP7 306 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 SPSB4Q96A44 273 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 RNF170Q96K19 258 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 CLCF1Q9UBD9 225 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 hCG_38984A0A1B0GV85 526 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 STOMP27105 288 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 MPGP29372 298 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 OR3A2P47893 321 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 VEGFCP49767 419 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 KCNJ8Q15842 424 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 CDNFQ49AH0 187 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 CD276Q5ZPR3 534 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 FAAP20Q6NZ36 180 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 STEAP1BQ6NZ63 245 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 TMEM53Q6P2H8 277 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 P4HA3Q7Z4N8 544 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 GABRG1Q8N1C3 465 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 ZADH2Q8N4Q0 377 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 CHST4Q8NCG5 386 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 TMEM59Q9BXS4 323 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 NOX3Q9HBY0 568 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 NKIRAS2Q9NYR9 191 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 PRSS50Q9UI38 385 aa22.9■■□□□ 1.26
CCDC88C-205ENST00000553403 MAP1BP46821 2468 aaKnown RBP22.89■■□□□ 1.26
CCDC88C-205ENST00000553403 MEIS3P1A6NDR6 274 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 TMEM235A6NFC5 223 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 EFSO43281 561 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 SS18L1O75177 396 aaPredicted RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 MPIG6BO95866 241 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 PRKACBP22694 351 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 MECP2P51608 486 aaKnown RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 TNK1Q13470 666 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 CNN3Q15417 329 aaKnown RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 FBXW9Q5XUX1 488 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 TMEM42Q69YG0 159 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF782Q6ZMW2 699 aaPredicted RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 CPNE2Q96FN4 548 aaPredicted RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 FYTTD1Q96QD9 318 aaKnown RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 URM1Q9BTM9 101 aaKnown RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 CST11Q9H112 138 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 OR10A4Q9H209 315 aa22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 TP63Q9H3D4 680 aaPredicted RBP22.89■■□□□ 1.25
CCDC88C-205ENST00000553403 DNAJC13O75165 2243 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 ICMTO60725 284 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 HLA-HP01893 362 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 RCVRNP35243 200 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 FAM3AP98173 230 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 CBX3Q13185 183 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 CLVS2Q5SYC1 327 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 IGFL3Q6UXB1 125 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 TMEM104Q8NE00 496 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 NPRL2Q8WTW4 380 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 DMRTB1Q96MA1 342 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 GPR173Q9NS66 373 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 POU2F3Q9UKI9 436 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 FLVCR2Q9UPI3 526 aa22.88■■□□□ 1.25
CCDC88C-205ENST00000553403 EPG5Q9HCE0 2579 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 A0A1B0GUH1 482 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 CD3DP04234 171 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 EDN3P14138 238 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms