RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LRCOL1A6NCL2 159 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 COLCA2A8K830 154 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 M0R1X1 148 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 DFFAO00273 331 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 BET1O15155 118 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 CHMP2AO43633 222 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 WISP3O95389 354 aaPredicted RBP2.41□□□□□ -2.02
VPS29-205ENST00000548539 LCA5LO95447 670 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 PAHP00439 452 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 MT-ND4P03905 459 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 ZNF286BP0CG31 522 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 CSKP41240 450 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 IFITM3Q01628 133 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 HNRNPA1L2Q32P51 320 aaKnown RBP2.41□□□□□ -2.02
VPS29-205ENST00000548539 COX19Q49B96 90 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 NKAIN1Q4KMZ8 207 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 C6orf99Q4VX62 202 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 TMEM236Q5W0B7 351 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 AP1ARQ63HQ0 302 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 KDM4DQ6B0I6 523 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 CD300LGQ6UXG3 332 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 NECAP1Q8NC96 275 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 ZNF75CPQ92670 426 aaPredicted RBP2.41□□□□□ -2.02
VPS29-205ENST00000548539 C18orf15Q96N68 181 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 TEAD3Q99594 435 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 SPIN2AQ99865 258 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 SPIN2BQ9BPZ2 258 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 TIMM29Q9BSF4 260 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 TOLLIPQ9H0E2 274 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 GAL3ST2Q9H3Q3 398 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 KIR3DX1Q9H7L2 352 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 ENOPH1Q9UHY7 261 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 SLIT3O75094 1523 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 A0A0A6YYD5 115 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 IGHV7-4-1A0A0J9YVY3 117 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 GOLGA8JA6NMD2 632 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 BOLA2-SMG1P6H3BVE0 249 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 KDELR3O43731 214 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 SMC2O95347 1197 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 PLEKHA8P1O95397 391 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 SNAI1O95863 264 aaPredicted RBP2.4□□□□□ -2.03
VPS29-205ENST00000548539 PTHP01270 115 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 TRBV12-3P01733 135 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 GOLGA8HP0CJ92 632 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 HSPD1P10809 573 aaKnown RBP2.4□□□□□ -2.03
VPS29-205ENST00000548539 HOXB8P17481 243 aaPredicted RBP2.4□□□□□ -2.03
VPS29-205ENST00000548539 APLNRP35414 380 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 NUP62P37198 522 aaPredicted RBP2.4□□□□□ -2.03
VPS29-205ENST00000548539 NAB1Q13506 487 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 DMC1Q14565 340 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 STK38Q15208 465 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 NDUFAF6Q330K2 333 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 SLC25A35Q3KQZ1 300 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 SLC25A25Q6KCM7 469 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 TMPRSS11AQ6ZMR5 421 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 Q6ZSR6 202 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 DRAM1Q8N682 238 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 ASCC1Q8N9N2 400 aaKnown RBP2.4□□□□□ -2.03
VPS29-205ENST00000548539 OR5T1Q8NG75 326 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 OR4M1Q8NGD0 313 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 OR13G1Q8NGZ3 307 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 DCAKDQ8WVC6 231 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 ING5Q8WYH8 240 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 SLC25A46Q96AG3 418 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 FAM131CQ96AQ9 280 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 RNF170Q96K19 258 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 RDH12Q96NR8 316 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 DOK1Q99704 481 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 TMEM175Q9BSA9 504 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 NUDT9Q9BW91 350 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 CHRNA10Q9GZZ6 450 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 ARV1Q9H2C2 271 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 RHBDL2Q9NX52 303 aa2.4□□□□□ -2.03
VPS29-205ENST00000548539 NDRG2Q9UN36 371 aaKnown RBP2.4□□□□□ -2.03
VPS29-205ENST00000548539 LINC01619G3V211 115 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 MANBAO00462 879 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 TAAR5O14804 337 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 IL1RNP18510 177 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 CD9P21926 228 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 IVDP26440 423 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 PMELP40967 661 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 SLC35A1P78382 337 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 SLC35B1P78383 322 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 XIAPP98170 497 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 RPL18AQ02543 176 aaKnown RBP2.39□□□□□ -2.03
VPS29-205ENST00000548539 ATP6V1FQ16864 119 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 YIF1BQ5BJH7 314 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 TEX30Q5JUR7 227 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 KRTAP5-7Q6L8G8 165 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 DAW1Q8N136 415 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 MITD1Q8WV92 249 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 TMEM234Q8WY98 164 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 CPNE4Q96A23 557 aaPredicted RBP2.39□□□□□ -2.03
VPS29-205ENST00000548539 FAM19A4Q96LR4 140 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 Q96MT0 163 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 RNF157Q96PX1 679 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 LCE3DQ9BYE3 92 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 EXOSC4Q9NPD3 245 aaKnown RBP2.39□□□□□ -2.03
VPS29-205ENST00000548539 LZTFL1Q9NQ48 299 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 C21orf62Q9NYP8 219 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms