RNA–Protein interactions for RNA: ENST00000539712.5

DDB1-215, Transcript of damage specific DNA binding protein 1, human

TSL 2

Gene DDB1, Length 1,020 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-215	ENST00000539712	TVP23B	Q9NYZ1	205 aa		13.92	□□□□□ -0.18
DDB1-215	ENST00000539712	LRP12	Q9Y561	859 aa		13.92	□□□□□ -0.18
DDB1-215	ENST00000539712	IGHV3OR15-7	A0A075B7D8	119 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	TRAV38-1	A0A0B4J264	116 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-215	ENST00000539712		A6NLC8	198 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	PRKY	O43930	277 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	MITF	O75030	526 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	GYPA	P02724	150 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	CFL1	P23528	166 aa	Known RBP	13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	CFHR2	P36980	270 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	NPY4R	P50391	375 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	PSMA6	P60900	246 aa	Known RBP	13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	FGF12	P61328	243 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	ACTG1	P63261	375 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	MZT1	Q08AG7	82 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	ATP6AP1	Q15904	470 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	SNAPC1	Q16533	368 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	GFOD2	Q3B7J2	385 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	WDR82	Q6UXN9	313 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	KRT74	Q7RTS7	529 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	GALNT4	Q8N4A0	578 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	OR8B12	Q8NGG6	310 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	OR8S1	Q8NH09	359 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	DNAJC9	Q8WXX5	260 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	GCDH	Q92947	438 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	SEH1L	Q96EE3	360 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX5	Q96PT3	197 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	YIPF3	Q9GZM5	350 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	MMADHC	Q9H3L0	296 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-215	ENST00000539712	RNPEPL1	Q9HAU8	725 aa		13.91	□□□□□ -0.18
DDB1-215	ENST00000539712		A0A1B0GW55	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DNAJC9-AS1	A6NH13	148 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	ADAM20	O43506	726 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	NDUFA2	O43678	99 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	CST4	P01036	141 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4L2	P0CJ85	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4L3	P0CJ86	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4L4	P0CJ87	422 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4L5	P0CJ88	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4L6	P0CJ89	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4L7	P0CJ90	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	MMP9	P14780	707 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	AMY2B	P19961	511 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	PRTN3	P24158	256 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	RPS7	P62081	194 aa	Known RBP	13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	KCNJ8	Q15842	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	FAM76B	Q5HYJ3	339 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4L9	Q6RFH8	374 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	BCDIN3D	Q7Z5W3	292 aa	Known RBP	13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	FGFRL1	Q8N441	504 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	CSNK2A3	Q8NEV1	391 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	OR5K1	Q8NHB7	308 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	LRRC29	Q8WV35	223 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	OR5P3	Q8WZ94	311 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUS3L	Q96G46	650 aa	Known RBP	13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	PAPOLG	Q9BWT3	736 aa	Known RBP	13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	FAM206A	Q9NX38	181 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	ERVK-18	Q9QC07	812 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	KAAG1	Q9UBP8	84 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	DUX4	Q9UBX2	424 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	COPS3	Q9UNS2	423 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	MGAM2	Q2M2H8	2515 aa		13.9	□□□□□ -0.18
DDB1-215	ENST00000539712	TRAV40	A0A0B4J280	105 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	hCG_1807616	A0A1W2PRN6	198 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	ZNF850	A8MQ14	1090 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712		M0R129	80 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	PSMD9	O00233	223 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	CDIPT	O14735	213 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	ENSA	O43768	121 aa	Known RBP	13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	SFTPB	P07988	381 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	ESRRG	P62508	458 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	ROM1	Q03395	351 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	AADACL4	Q5VUY2	407 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	KDM4D	Q6B0I6	523 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	HPSE2	Q8WWQ2	592 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	TECTB	Q96PL2	329 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	TBX15	Q96SF7	602 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	MS4A7	Q9GZW8	240 aa	Predicted RBP	13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	PRDM13	Q9H4Q3	707 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	NIPAL2	Q9H841	368 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	TRIM36	Q9NQ86	728 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	LAMP5	Q9UJQ1	280 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	MPC1	Q9Y5U8	109 aa		13.89	□□□□□ -0.19
DDB1-215	ENST00000539712	MDFIC2	A0A1B0GVS7	189 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	ZAR1L	A6NP61	321 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	CLDN34	H7C241	214 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	DVL1	O14640	695 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	IGLV3-1	P01715	115 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	MRPL3	P09001	348 aa	Known RBP	13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	DCTD	P32321	178 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	BAMBI	Q13145	260 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	PRDX4	Q13162	271 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	SLC9A3R2	Q15599	337 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	AWAT1	Q58HT5	328 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	SLX4IP	Q5VYV7	408 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	CD276	Q5ZPR3	534 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	DEGS2	Q6QHC5	323 aa		13.88	□□□□□ -0.19
DDB1-215	ENST00000539712	RBMS3	Q6XE24	437 aa	Known RBP	13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms