RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 KCNG3Q8TAE7 436 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 SNRNP27Q8WVK2 155 aaKnown RBP7.28□□□□□ -1.24
RNF4-220ENST00000513578 NANOS1Q8WY41 292 aaKnown RBP7.28□□□□□ -1.24
RNF4-220ENST00000513578 AQP3Q92482 292 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 FAM46BQ96A09 425 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 CPNE2Q96FN4 548 aaPredicted RBP7.28□□□□□ -1.24
RNF4-220ENST00000513578 POM121Q96HA1 1249 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 REEP6Q96HR9 211 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 TAAR6Q96RI8 345 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 ATG5Q9H1Y0 275 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 MMP28Q9H239 520 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 AUNIPQ9H7T9 357 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.28□□□□□ -1.24
RNF4-220ENST00000513578 NLKQ9UBE8 527 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 PRSS50Q9UI38 385 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 MRPS28Q9Y2Q9 187 aaKnown RBP7.28□□□□□ -1.24
RNF4-220ENST00000513578 ZZEF1O43149 2961 aa7.28□□□□□ -1.24
RNF4-220ENST00000513578 TRAV18A0A075B6X5 111 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 LOC100509620A0A075B734 347 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 INMT-MINDY4F8WBC2 141 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 MKRN2OSH3BPM6 223 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 IGHV3-9P01782 118 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 TCRBP04435 133 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 HCKP08631 526 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 CSF1P09603 554 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 PATE4P0C8F1 98 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 VSIG8P0DPA2 414 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 FAUP35544 74 aaKnown RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 SRP9P49458 86 aaKnown RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 MECP2P51608 486 aaKnown RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 FOXG1P55316 489 aaPredicted RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 ACTBP60709 375 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 RAB1AP62820 205 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 ACTG1P63261 375 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 FAM3AP98173 230 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 TGFBR3Q03167 851 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 PLP2Q04941 152 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 PMPCAQ10713 525 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 FOXC1Q12948 553 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 UNC119Q13432 240 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 TNK1Q13470 666 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 KISS1Q15726 138 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 UBE2V2Q15819 145 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 ZNF260Q3ZCT1 412 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 ACSF3Q4G176 576 aaPredicted RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 KRTCAP3Q53RY4 240 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 CLVS2Q5SYC1 327 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 C1QTNF12Q5T7M4 302 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 NSUN5P2Q63ZY6 315 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 AWAT2Q6E213 333 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 PLXDC2Q6UX71 529 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 TFAP2EQ6VUC0 442 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 BTN2A1Q7KYR7 527 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 AKAP14Q86UN6 197 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 ANGPTL5Q86XS5 388 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 UBE2J2Q8N2K1 259 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 FAM89BQ8N5H3 189 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 RBMXL3Q8N7X1 1067 aaKnown RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 C1orf162Q8NEQ5 155 aaPredicted RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 PIGTQ969N2 578 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 APOBEC3DQ96AK3 386 aaPredicted RBP7.27□□□□□ -1.25
RNF4-220ENST00000513578 UPRTQ96BW1 309 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 SEH1LQ96EE3 360 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 POM121L2Q96KW2 1035 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 ZNF75AQ96N20 296 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 CACNG6Q9BXT2 260 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 HRASLSQ9HDD0 168 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 PLSCR4Q9NRQ2 329 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 PIGLQ9Y2B2 252 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 N6AMT1Q9Y5N5 214 aa7.27□□□□□ -1.25
RNF4-220ENST00000513578 A0A0B4J293 547 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 ZNF816-ZNF321PA0A0X1KG74 233 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 C7orf66A4D0T2 115 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 MBD3L4A6NDZ8 208 aaPredicted RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 MBD3L3A6NE82 208 aaPredicted RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 MBD3L5A6NJ08 208 aaPredicted RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 FOXI3A8MTJ6 420 aaPredicted RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 WDR1O75083 606 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 CA11O75493 328 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 KDM4BO94953 1096 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 DHFRP00374 187 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 HLA-HP01893 362 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 LPLP06858 475 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 HOXD4P09016 255 aaPredicted RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 GSTP1P09211 210 aaKnown RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 EDN3P14138 238 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 FAHP16930 419 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 COX5AP20674 150 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 ACKR3P25106 362 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 STOMP27105 288 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 PTGFRP43088 359 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 KIR2DL2P43627 348 aaPredicted RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 ZP1P60852 638 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 ARL6IP1Q15041 203 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 PNLIPRP3Q17RR3 467 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 GFOD2Q3B7J2 385 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 TBRG1Q3YBR2 411 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 RSBN1Q5VWQ0 802 aaPredicted RBP7.26□□□□□ -1.25
RNF4-220ENST00000513578 GLIPR1L1Q6UWM5 242 aa7.26□□□□□ -1.25
RNF4-220ENST00000513578 Q6ZT83 130 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms