RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 DUX4L5P0CJ88 424 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 DUX4L6P0CJ89 424 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 DUX4L7P0CJ90 424 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 SLC2A1P11166 492 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 HIST1H1DP16402 221 aaKnown RBP10.54□□□□□ -0.72
NUP54-202ENST00000502850 ZNF24P17028 368 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 NAT1P18440 290 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 CXCL2P19875 107 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 DHRS2Q13268 280 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 VAX1Q5SQQ9 334 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 JMJD6Q6NYC1 403 aaPredicted RBP10.54□□□□□ -0.72
NUP54-202ENST00000502850 DRAM2Q6UX65 266 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 LYG2Q86SG7 212 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 TMEM17Q86X19 198 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 SSC4DQ8WTU2 575 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 ZNF799Q96GE5 643 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 SFXN2Q96NB2 322 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 ZNF385AQ96PM9 386 aaKnown RBP10.54□□□□□ -0.72
NUP54-202ENST00000502850 PHB2Q99623 299 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 SELENOIQ9C0D9 397 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 CHST5Q9GZS9 411 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 TMEM9BQ9NQ34 198 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 DUX4Q9UBX2 424 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 NOP16Q9Y3C1 178 aaKnown RBP10.54□□□□□ -0.72
NUP54-202ENST00000502850 PCNX2A6NKB5 2137 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 FXYD6-FXYD2A0A087WZ82 144 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 TEX51A0A1B0GUA7 166 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 RPS10-NUDT3A0A1W2PQS6 291 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 SMAD9O15198 467 aaKnown RBP10.53□□□□□ -0.72
NUP54-202ENST00000502850 CA11O75493 328 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 CRTAPO75718 401 aaPredicted RBP10.53□□□□□ -0.72
NUP54-202ENST00000502850 B3GALNT1O75752 331 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 IL2RAP01589 272 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 FCER2P06734 321 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 GNB3P16520 340 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 HLA-GP17693 338 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 TCN2P20062 427 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 OR3A4PP47883 348 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 AP2S1P53680 142 aaPredicted RBP10.53□□□□□ -0.72
NUP54-202ENST00000502850 B3GALT5-AS1P59052 145 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 PCBD1P61457 104 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 GFOD2Q3B7J2 385 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 RIPPLY2Q5TAB7 128 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 TMEM65Q6PI78 240 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 DBX2Q6ZNG2 339 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 TMUB2Q71RG4 321 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 CCDC28AQ8IWP9 274 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 OR4K15Q8NH41 348 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 OR2V1Q8NHB1 315 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 CPT1CQ8TCG5 803 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 RHBDD1Q8TEB9 315 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 CT55Q8WUE5 264 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 NUDCD2Q8WVJ2 157 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 FXYD6Q9H0Q3 95 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 PLEK2Q9NYT0 353 aa10.53□□□□□ -0.72
NUP54-202ENST00000502850 BOKQ9UMX3 212 aaPredicted RBP10.53□□□□□ -0.72
NUP54-202ENST00000502850 A0A0D9SG52 128 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 SERPINE3A8MV23 424 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 F5H5K5 113 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 G3V3Y1 287 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 JMJD7P0C870 316 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 KLK2P20151 261 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 CPT2P23786 658 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 HRH1P35367 487 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 CYB561P49447 251 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 P2RX3P56373 397 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 CARD18P57730 90 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 TAS2R46P59540 309 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 RPS27AP62979 156 aaKnown RBP10.52□□□□□ -0.73
NUP54-202ENST00000502850 KISS1Q15726 138 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 NKPD1Q17RQ9 610 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 ACER2Q5QJU3 275 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 ABLIM2Q6H8Q1 611 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 GSG1LQ6UXU4 331 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 RFPL4BQ6ZWI9 263 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 RAB11FIP2Q7L804 512 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 ESX1Q8N693 406 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 ZIC4Q8N9L1 334 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 OR4S1Q8NGB4 309 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 SCARB1Q8WTV0 552 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 MITD1Q8WV92 249 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 SPSB1Q96BD6 273 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 CMBLQ96DG6 245 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 C1orf147Q96MC9 270 aaPredicted RBP10.52□□□□□ -0.73
NUP54-202ENST00000502850 CNTNAP3BQ96NU0 1288 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 UCN2Q96RP3 112 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 OCSTAMPQ9BR26 566 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 CNTNAP3Q9BZ76 1288 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 CHST6Q9GZX3 395 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 RGCCQ9H4X1 137 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 MED9Q9NWA0 146 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 ABI3Q9P2A4 366 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 ZNF319Q9P2F9 582 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 LAMA1P25391 3075 aa10.52□□□□□ -0.73
NUP54-202ENST00000502850 IGHV3-15A0A0B4J1V0 119 aa10.51□□□□□ -0.73
NUP54-202ENST00000502850 WIPF3A6NGB9 483 aa10.51□□□□□ -0.73
NUP54-202ENST00000502850 MFNGO00587 321 aa10.51□□□□□ -0.73
NUP54-202ENST00000502850 SGCEO43556 437 aa10.51□□□□□ -0.73
NUP54-202ENST00000502850 SIX6O95475 246 aa10.51□□□□□ -0.73
NUP54-202ENST00000502850 CSN2P05814 226 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms