RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TMEM108Q6UXF1 575 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 RFPL4BQ6ZWI9 263 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 HIST2H3AQ71DI3 136 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 HSD17B8Q92506 261 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 PRRT1Q99946 306 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 PLEKHJ1Q9NW61 149 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 CGGBP1Q9UFW8 167 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 SYNGR3O43761 229 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 LYZL6O75951 148 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 LPLP06858 475 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 M6PRP20645 277 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 SERPINA2P20848 420 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 PPP1CBP62140 327 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 SRSF6Q13247 344 aaKnown RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 DYRK1AQ13627 763 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 UNQ6494/PRO21346Q6UXR6 183 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 LYSMD2Q8IV50 215 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 CPEB3Q8NE35 698 aaKnown RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 ZNF442Q9H7R0 627 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 PRSS50Q9UI38 385 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 MGAT4AQ9UM21 535 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 PTPRZ1P23471 2315 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 MBD3L4A6NDZ8 208 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 MBD3L3A6NE82 208 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 MBD3L5A6NJ08 208 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 INMT-MINDY4F8WBC2 141 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 FAHP16930 419 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 CTRB1P17538 263 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 CCL1P22362 96 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 CLDN12P56749 244 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 TAS2R20P59543 309 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 GNG3P63215 75 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 OR8G1Q15617 311 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 GABRA6Q16445 453 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 CTRB2Q6GPI1 263 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 TFAP2EQ6VUC0 442 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 MDP1Q86V88 176 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 LSRQ86X29 649 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 CMTM4Q8IZR5 234 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 MBD3L2Q8NHZ7 208 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 RPS4Y2Q8TD47 263 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 BCL2L2Q92843 193 aaPredicted RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 ZNF524Q96C55 264 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 BOD1Q96IK1 185 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 MED28Q9H204 178 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 M0R1B8 84 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 EIF4EP06730 217 aaKnown RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 ADRB1P08588 477 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 PRKACAP17612 351 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 ECI1P42126 302 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 PCGF3Q3KNV8 242 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 OR1J1Q8NGS3 322 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 FBXO17Q96EF6 278 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 RNF170Q96K19 258 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 RBFOX1Q9NWB1 397 aaKnown RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 TTC28Q96AY4 2481 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 PCNX2A6NKB5 2137 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 CEP350Q5VT06 3117 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 ZNF736B4DX44 427 aaPredicted RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 SC5DO75845 299 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 C1orf100Q5SVJ3 147 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 OR5H2Q8NGV7 314 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 OR14K1Q8NGZ2 314 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 ANGPTL6Q8NI99 470 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 SMIM4Q8WVI0 70 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 NABP1Q96AH0 204 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 ZNF107Q9UII5 783 aaPredicted RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 C14orf166Q9Y224 244 aaKnown RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 CENPFP49454 3210 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 A0A0B4J203 849 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 GSTZ1O43708 216 aaPredicted RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 TAS2R31P59538 309 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 PLEKHN1Q494U1 663 aaPredicted RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 RBMXL3Q8N7X1 1067 aaKnown RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 OR56B2PQ8NGI1 322 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 TRMT61AQ96FX7 289 aaKnown RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 NUDT16L1Q9BRJ7 211 aaKnown RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 CACNG6Q9BXT2 260 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 TMEM100Q9NV29 134 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 TMEM210A6NLX4 147 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 C16orf97H3BN30 126 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 TGM6O95932 706 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 PNPP00491 289 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 H2AFB2P0C5Z0 115 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 CDK2P24941 298 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 GDNFP39905 211 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 MADCAM1Q13477 382 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 KISS1Q15726 138 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 PHYHD1Q5SRE7 291 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 STEAP3Q658P3 488 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 DCDC5Q6ZRR9 648 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 Q6ZTK2 550 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 MRGPRGQ86SM5 289 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 LRRTM1Q86UE6 522 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 SELENOIQ9C0D9 397 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 RIMS4Q9H426 269 aaPredicted RBP7.31□□□□□ -1.24
USP54-215ENST00000497106 OR5V1Q9UGF6 321 aa7.31□□□□□ -1.24
USP54-215ENST00000497106 SERPINE3A8MV23 424 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 RAB3DO95716 219 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 PAHP00439 452 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms