RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 C1orf21Q9H246 121 aa15.55■□□□□ 0.08
CCDC88B-206ENST00000473405 DUX4Q9UBX2 424 aa15.55■□□□□ 0.08
CCDC88B-206ENST00000473405 CENPVL3A0A0U1RRI6 287 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 P2RY10O00398 339 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 SELENOFO60613 162 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 APOC1P02654 83 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 PLBD1Q6P4A8 553 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 C16orf87Q6PH81 154 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 Q6YL49 198 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 SHFQ7M4L6 423 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 HS3ST5Q8IZT8 346 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 PNLDC1Q8NA58 520 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 OTOSQ8NHW6 89 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 LRRC29Q8WV35 223 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 CANT1Q8WVQ1 401 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 ITPKCQ96DU7 683 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 TLNRD1Q9H1K6 362 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 OR10A2Q9H208 303 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 OR51V1Q9H2C8 321 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 ZNF696Q9H7X3 374 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 SP140LQ9H930 580 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 RNPEPL1Q9HAU8 725 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 BRD7Q9NPI1 651 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 KLHDC2Q9Y2U9 406 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 RHBDD3Q9Y3P4 386 aa15.54■□□□□ 0.08
CCDC88B-206ENST00000473405 TIPRLO75663 272 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 MDKP21741 143 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 PAICSP22234 425 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 CFL1P23528 166 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 ACKR3P25106 362 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 POU1F1P28069 291 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 GINS1Q14691 196 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 WDR38Q5JTN6 314 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 BTN2A1Q7KYR7 527 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 TMIGD2Q96BF3 282 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 SEH1LQ96EE3 360 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 PAPOLGQ9BWT3 736 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 RGCCQ9H4X1 137 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 NOX4Q9NPH5 578 aa15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 PDP1Q9P0J1 537 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-206ENST00000473405 FAM181BA6NEQ2 426 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 AQP12BA6NM10 295 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 PRR23D1E9PI22 279 aaPredicted RBP15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 PRODHO43272 600 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 WIPF1O43516 503 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 LYNP07948 512 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 MELTFP08582 738 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 H2BFMP0C1H6 154 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 PRR23D2P0DMB1 279 aaPredicted RBP15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 MUC1P15941 1255 aaPredicted RBP15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 OMGP23515 440 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 C11orf91Q3C1V1 193 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 METTL11BQ5VVY1 283 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 AQP12AQ8IXF9 295 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 CSNK2A3Q8NEV1 391 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 BBS1Q8NFJ9 593 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 ST8SIA4Q92187 359 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 ZDHHC16Q969W1 377 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 PGAM5Q96HS1 289 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 CCL13Q99616 98 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 THTPAQ9BU02 230 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 CHIAQ9BZP6 476 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 FGF23Q9GZV9 251 aaPredicted RBP15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 KIF17Q9P2E2 1029 aa15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 RPUSD1Q9UJJ7 312 aaKnown RBP15.52■□□□□ 0.08
CCDC88B-206ENST00000473405 POM121CA8CG34 1229 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 ECDO95905 644 aaPredicted RBP15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 SLC2A5P22732 501 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 GNALP38405 381 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 NAA10P41227 235 aaPredicted RBP15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 PSMA6P60900 246 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 ARF6P62330 175 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 CDK5Q00535 292 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 PDCD1Q15116 288 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 MICBQ29980 383 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 CPOQ8IVL8 374 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 GALNT4Q8N4A0 578 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 FAM216BQ8N7L0 139 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 ZNF454Q8N9F8 522 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 GATAD2BQ8WXI9 593 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 LYZL4Q96KX0 146 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 TNFRSF19Q9NS68 423 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 MMP24Q9Y5R2 645 aa15.51■□□□□ 0.07
CCDC88B-206ENST00000473405 IGHV1-69DA0A0B4J2H0 117 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 CDIPTO14735 213 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 IGHV1-69P01742 117 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 OSMP13725 252 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 AMY2BP19961 511 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 RELBQ01201 579 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 IL5RAQ01344 420 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 STUMQ69YW2 141 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 TMEM86BQ8N661 226 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 LY6G5BQ8NDX9 201 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 OR8B12Q8NGG6 310 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 THEM6Q8WUY1 208 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 HPSE2Q8WWQ2 592 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 LHX4Q969G2 390 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 C12orf43Q96C57 262 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 SLITRK2Q9H156 845 aa15.5■□□□□ 0.07
CCDC88B-206ENST00000473405 ACOXLQ9NUZ1 547 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms