RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 NUMA1Q14980 2115 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 EXOC1LA0A1B0GW35 172 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 FAM231BA6NCW3 169 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 SULT2B1O00204 365 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 CXCL13O43927 109 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 TNFSF13O75888 250 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 TNFSF15O95150 251 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 IGKV2-30P06310 120 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 CD99P14209 185 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 MLF1P58340 268 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 GNGT1P63211 74 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 TGFBR3Q03167 851 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 ACVR1Q04771 509 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 BCL2L1Q07817 233 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 OXA1LQ15070 435 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 PAFAH1B3Q15102 231 aaKnown RBP2.06□□□□□ -2.08
MCF2-204ENST00000414978 NDUFA9Q16795 377 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 ANKRD22Q5VYY1 191 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 ZNF324BQ6AW86 544 aaPredicted RBP2.06□□□□□ -2.08
MCF2-204ENST00000414978 SLC35E4Q6ICL7 350 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 RFWD3Q6PCD5 774 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 RTL4Q6ZR62 310 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 DNAAF3Q8N9W5 541 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 LYPD6BQ8NI32 183 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 SLC25A38Q96DW6 304 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 SERPINB12Q96P63 405 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 OPALINQ96PE5 141 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 TMEM109Q9BVC6 243 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 EBF2Q9HAK2 575 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 WWOXQ9NZC7 414 aa2.06□□□□□ -2.08
MCF2-204ENST00000414978 NXT1Q9UKK6 140 aaKnown RBP2.06□□□□□ -2.08
MCF2-204ENST00000414978 CHD3Q12873 2000 aaKnown RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 NBPF19A0A087WUL8 3843 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 MSGN1A6NI15 193 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 OR5B21A6NL26 309 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 D6RAR5 112 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 FAM72CH0Y354 149 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 CLDN34H7C241 214 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 DFFAO00273 331 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 HSBP1O75506 76 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ADAP1O75689 374 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 NSA2O95478 260 aaKnown RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 PPP1R3DO95685 299 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 LALBAP00709 142 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 IGLV3-25P01717 112 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 COX5BP10606 129 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 CXCR2P25025 360 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 IL12BP29460 328 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 CD40LGP29965 261 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ZNF121P58317 390 aaPredicted RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 SCRN3Q0VDG4 424 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 FASTKQ14296 549 aaKnown RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 KCNJ11Q14654 390 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 TMED2Q15363 201 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ZNF876PQ49A33 203 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 FAM72AQ5TYM5 149 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 FAM72DQ6L9T8 149 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ATRAIDQ6UW56 229 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 FRRS1Q6ZNA5 592 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ZNF621Q6ZSS3 439 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 C3orf62Q6ZUJ4 267 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 PID1Q7Z2X4 250 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 SETD3Q86TU7 594 aaPredicted RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 FAM72BQ86X60 149 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 BOD1L2Q8IYS8 172 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 SLC25A45Q8N413 288 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 RIBC1Q8N443 379 aaPredicted RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 C17orf78Q8N4C9 275 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ATPAF2Q8N5M1 289 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 TTC29Q8NA56 475 aaPredicted RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 UBE2E3Q969T4 207 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ISOC2Q96AB3 205 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 OLFM3Q96PB7 478 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 CCDC28BQ9BUN5 200 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 HOXD1Q9GZZ0 328 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 C1orf198Q9H425 327 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 PAQR5Q9NXK6 330 aaPredicted RBP2.05□□□□□ -2.08
MCF2-204ENST00000414978 PROCRQ9UNN8 238 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 SNX10Q9Y5X0 201 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ABCA12Q86UK0 2595 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 DMXL2Q8TDJ6 3036 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 BSNQ9UPA5 3926 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 IGKV1D-8A0A087WSZ0 117 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 SHISA9B4DS77 424 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 G3V3Y1 287 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 M0R3G1 203 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 KCNK1O00180 336 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 DPM1O60762 260 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 BANF1O75531 89 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 EIF3GO75821 320 aaKnown RBP eCLIP2.05□□□□□ -2.08
MCF2-204ENST00000414978 SC5DO75845 299 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 LYPD3O95274 346 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 H2BFMP0C1H6 154 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 GNB3P16520 340 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 ELK3P41970 407 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 NSG1P42857 185 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 GPR1P46091 355 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 CAPZBP47756 277 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 RORCP51449 518 aa2.05□□□□□ -2.08
MCF2-204ENST00000414978 TSPAN5P62079 268 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms