RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CHIAQ9BZP6 476 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 DHX35Q9H5Z1 703 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 THYN1Q9P016 225 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PAK5Q9P286 719 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 UGGT1Q9NYU2 1555 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ATP7AQ04656 1500 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MAP3K1Q13233 1512 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 FAM135AQ9P2D6 1515 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PREX2Q70Z35 1606 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CDC42BPBQ9Y5S2 1711 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 IQGAP1P46940 1657 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ITSN2Q9NZM3 1697 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 INO80Q9ULG1 1556 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 E9PAM4 449 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ATP6V1G2-DDX39BF2Z307 99 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 F8W036 122 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF593O00488 134 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 EIF3GO75821 320 aaKnown RBP eCLIP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TBX6O95947 436 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CD8AP01732 235 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 CRHP06850 196 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 C8orf88P0DMB2 117 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ICAM2P13598 275 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 HSD17B1P14061 328 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 FOLR1P15328 257 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SHMT2P34897 504 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 OR1D4P47884 311 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 FABP6P51161 128 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 UBE2E1P51965 193 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SUB1P53999 127 aaKnown RBP eCLIP3.3□□□□□ -1.885e-8■■■□□ 15
HMGB1-204ENST00000399489 CLDN12P56749 244 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TMEM33P57088 247 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TAS2R31P59538 309 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 LMO4P61968 165 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PSPHP78330 225 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 RPL19P84098 196 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 FAM3AP98173 230 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ST3GAL4Q11206 333 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 EIF4EBP2Q13542 120 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 KIAA0141Q14154 515 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TFDP2Q14188 446 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PTGES3Q15185 160 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 WHAMMP3Q1A5X7 153 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TPTE2P1Q5T6R2 138 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MARC1Q5VT66 337 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 C4orf22Q6V702 233 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 RBMS3Q6XE24 437 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 MBOAT2Q6ZWT7 520 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 BLIDQ8IZY5 108 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF561Q8N587 486 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 LHFPL5Q8TAF8 219 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SYNPRQ8TBG9 265 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SMIM19Q96E16 107 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 UBE2E2Q96LR5 201 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF597Q96LX8 424 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 QKIQ96PU8 341 aaKnown RBP eCLIP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 PDCD1LG2Q9BQ51 273 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TMEM109Q9BVC6 243 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 UBXN6Q9BZV1 441 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 NXF2Q9GZY0 626 aaKnown RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ZSCAN16Q9H4T2 348 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 RNF167Q9H6Y7 350 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF430Q9H8G1 570 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 RHOFQ9HBH0 211 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TIGARQ9NQ88 270 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 TAS2R1Q9NYW7 299 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SMPXQ9UHP9 88 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF256Q9Y2P7 627 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-204ENST00000399489 NDUFAF1Q9Y375 327 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 OR51B2Q9Y5P1 312 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SLC22A7Q9Y694 548 aa3.3□□□□□ -1.88
HMGB1-204ENST00000399489 SYCP2Q9BX26 1530 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 CLIP1P30622 1438 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 FMN1Q68DA7 1419 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 FGD6Q6ZV73 1430 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 ZC3H13Q5T200 1668 aaKnown RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KIAA0232Q92628 1395 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 IGHV3OR16-12A0A075B7B8 117 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 IGKV1D-8A0A087WSZ0 117 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KIR2DL5BA0A0G2JN68 375 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KIR2DL5BA0A0G2JPC4 375 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 NCBP2LA6PVI3 153 aaKnown RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 F5H5T6 163 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 PSMD12O00232 456 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 NUPL2O15504 423 aaKnown RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 PHF1O43189 567 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 FADS1O60427 444 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 SLC16A7O60669 478 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 GLSO94925 669 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 ATP6V1G2O95670 118 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 LALBAP00709 142 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KLK3P07288 261 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 UGT2B7P16662 529 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 SHC1P29353 583 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 TIMP3P35625 211 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 RAB7AP51149 207 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 AP2S1P53680 142 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 FGF8P55075 233 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 PAX9P55771 341 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms