RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OR8B4Q96RC9 309 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 BCL2L10Q9HD36 194 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 BOLA1Q9Y3E2 137 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 EPHA2P29317 976 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 SLC6A12P48065 614 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 TRILQ7L0X0 811 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 SLCO1C1Q9NYB5 712 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 CDK5RAP2Q96SN8 1893 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 RNPS1Q15287 305 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 PP6455Q8WZ26 134 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 DUS3LQ96G46 650 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 ADAT1Q9BUB4 502 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 MED29Q9NX70 200 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 CD3DP04234 171 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 IL5P05113 134 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 PJVKQ0ZLH3 352 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 DHRS7BQ6IAN0 325 aaPredicted RBP11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 ADPRHL1Q8NDY3 354 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 OR2Z1Q8NG97 314 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 OR52N4Q8NGI2 321 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 MISP3Q96FF7 219 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 VAMP8Q9BV40 100 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 SSC5DA1L4H1 1573 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 FGF2P09038 288 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 BMP5P22003 454 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 MDH2P40926 338 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 OR2B8PP59922 312 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 PAX5Q02548 391 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF528Q3MIS6 628 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 LYRM7Q5U5X0 104 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 BTNL3Q6UXE8 466 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 Q6ZNX1 250 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF596Q8TC21 504 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 RTN4IP1Q8WWV3 396 aaPredicted RBP11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 SARGQ9BW04 601 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 ARRDC1-AS1Q9H2J1 176 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 TRAPPC1Q9Y5R8 145 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 CTSLP07711 333 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 HNRNPA3P51991 378 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 MAGT1Q9H0U3 335 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 A4GNTQ9UNA3 340 aa11.54□□□□□ -0.56
CCDC88C-204ENST00000389857 MS4A18H0YCH9 400 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 ADAM11O75078 769 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 ALX3O95076 343 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 GSG1Q2KHT4 349 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 MS4A18Q3C1V0 323 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 OR2T2Q6IF00 324 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF574Q6ZN55 896 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 BAP18Q8IXM2 172 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 GPX5O75715 221 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 OR1F12Q8NHA8 337 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 SIGLEC11Q96RL6 698 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 TJP1Q07157 1748 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 A0A1W2PPQ1 181 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 TOX3O15405 576 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 TMPRSS11DO60235 418 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 FZD6O60353 706 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 EVX1P49640 407 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 FABP5Q01469 135 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 OR13C5Q8NGS8 318 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 AREGP15514 252 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 BSGP35613 385 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 OPRK1P41145 380 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 RAB7AP51149 207 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 GALNT16Q8N428 558 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 MRGPRX1Q96LB2 322 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 CCDC187A0A096LP49 1063 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 G0S2P27469 103 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 GP2P55259 537 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 PMP22Q01453 160 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 RNF212Q495C1 297 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 UBE3DQ7Z6J8 389 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 RNF167Q9H6Y7 350 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 ADGRL4Q9HBW9 690 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 POM121BA6NF01 834 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 DNASE2O00115 360 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 TMEM65Q6PI78 240 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 GPR119Q8TDV5 335 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 CMBLQ96DG6 245 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 ESRP2Q9H6T0 727 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF391Q9UJN7 358 aa11.53□□□□□ -0.56
CCDC88C-204ENST00000389857 TRGV5A0A0B4J1U4 118 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 DHHO43323 396 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 SPRY1O43609 319 aaPredicted RBP11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 MMP15P51511 669 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 PRDX4Q13162 271 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 MICBQ29980 383 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 LYPD8Q6UX82 237 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 CALHM3Q86XJ0 350 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 OR4C5Q8NGB2 326 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 HMGA1P17096 107 aaKnown RBP11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 DEFB123Q8N688 67 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 SEBOXQ9HB31 216 aaPredicted RBP11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 POMT1Q9Y6A1 747 aa11.52□□□□□ -0.56
CCDC88C-204ENST00000389857 A0A1W2PPC4 97 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF716A6NP11 495 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 PI3P19957 117 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 GPNMBQ14956 572 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 PATE1Q8WXA2 126 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 FGF20Q9NP95 211 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms