RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DBPQ10586 325 aaPredicted RBP12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 TSPAN31Q12999 210 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 FAM189A2Q15884 450 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 AANATQ16613 207 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 TIGD6Q17RP2 521 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 TEX30Q5JUR7 227 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 SLC35F1Q5T1Q4 408 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 STUMQ69YW2 141 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 GLYATQ6IB77 296 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 Q6ZPA2 131 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 CPLX4Q7Z7G2 160 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 CSNK2A3Q8NEV1 391 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 OR10Z1Q8NGY1 313 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 GNPDA2Q8TDQ7 276 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 CFHR4Q92496 578 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 H1FXQ92522 213 aaKnown RBP12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 TNFRSF14Q92956 283 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 SLAMF6Q96DU3 332 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 MICU1Q9BPX6 476 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 TLNRD1Q9H1K6 362 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 TOR3AQ9H497 397 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 CENPMQ9NSP4 180 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 HAO2Q9NYQ3 351 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 ABCD2Q9UBJ2 740 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 SF3B6Q9Y3B4 125 aaKnown RBP12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 MAB21L2Q9Y586 359 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 N6AMT1Q9Y5N5 214 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 COMMD3-BMI1R4GMX3 469 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 A0A1B0GW55 424 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 TVP23AA6NH52 213 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 ANXA2P2A6NMY6 339 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 H3BUX3 64 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 TBX1O43435 398 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 CCDC22O60826 627 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 SASH3O75995 380 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4L2P0CJ85 424 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4L3P0CJ86 424 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4L4P0CJ87 422 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4L5P0CJ88 424 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4L6P0CJ89 424 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4L7P0CJ90 424 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 NUDT2P50583 147 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 BLVRAP53004 296 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 CAV3P56539 151 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 FAM3AP98173 230 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4L9Q6RFH8 374 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 LIAT1Q6ZQX7 453 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 SLC16A9Q7RTY1 509 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 WDR86Q86TI4 376 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 FGFRL1Q8N441 504 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 FAM86B1Q8N7N1 296 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 OR4S1Q8NGB4 309 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 OR52H1Q8NGJ2 320 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 OR5D13Q8NGL4 314 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 MCUR1Q96AQ8 359 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 REEP6Q96HR9 211 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 GORASP2Q9H8Y8 452 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 ARGLU1Q9NWB6 273 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 DUX4Q9UBX2 424 aa12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 SLC25A10Q9UBX3 287 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-201ENST00000301897 A0A1W2PQ09 198 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 A0A1W2PRD5 423 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 A0A1W2PRF3 423 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 A0A1W2PRM7 423 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 TMEM210A6NLX4 147 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 ANXA2P07355 339 aaKnown RBP12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 SPARCP09486 303 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 SLC2A1P11166 492 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 HSD11B1P28845 292 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 RPS27P42677 84 aaKnown RBP12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 CSNK2BP67870 215 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 KLRD1Q13241 179 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 OR51G2Q8NGK0 314 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 PYURFQ96I23 114 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 CLPTM1LQ96KA5 538 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 RAB3IPQ96QF0 476 aaPredicted RBP12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 DDOQ99489 341 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 SSX3Q99909 188 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 RTL8AQ9BWD3 113 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 PAPOLGQ9BWT3 736 aaKnown RBP12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 NPFFR1Q9GZQ6 430 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 RGCCQ9H4X1 137 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 SPAG4Q9NPE6 437 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 ADA2Q9NZK5 511 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 MPC1Q9Y5U8 109 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 CDH10Q9Y6N8 788 aa12.07□□□□□ -0.48
CCDC88B-201ENST00000301897 TRBV23-1A0A0A0MS06 115 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 hCG_38984A0A1B0GV85 526 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 ZNF593O00488 134 aaPredicted RBP12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 CDIPTO14735 213 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 SIGLEC5O15389 551 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 ANOS1P23352 680 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 POU1F1P28069 291 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 CX3CR1P49238 355 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 GSK3AP49840 483 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 LOXL3P58215 753 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 PSME3P61289 254 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 EMX1Q04741 257 aaPredicted RBP12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 LRRC75BQ2VPJ9 315 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms