RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 HMGB2P26583 209 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 LOXP28300 417 aaPredicted RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 ERP29P30040 261 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 CYB561P49447 251 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 PRLHRP49683 370 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 ACOT2P49753 483 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 HNRNPA3P51991 378 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 RAP1BP61224 184 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TFAMQ00059 246 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 CKAP4Q07065 602 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 BCL2L1Q07817 233 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 GNMTQ14749 295 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 ZNF79Q15937 498 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 DMRTC1Q5HYR2 192 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TRIQKQ629K1 86 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 CYB5R2Q6BCY4 276 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 C19orf35Q6ZS72 473 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TMED4Q7Z7H5 227 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TMEM25Q86YD3 366 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 FUNDC1Q8IVP5 155 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 BOD1L2Q8IYS8 172 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 SVOPLQ8N434 492 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TMEM156Q8N614 296 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TPRX1Q8N7U7 411 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 NOXO1Q8NFA2 376 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 OR4D9Q8NGE8 314 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 OR51D1Q8NGF3 324 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 OR5L2Q8NGL0 311 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 OR2Y1Q8NGV0 311 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 OR51A7Q8NH64 312 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 PHF10Q8WUB8 498 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 RPEQ96AT9 228 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TESCQ96BS2 214 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 DCPSQ96C86 337 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 PPP3R2Q96LZ3 170 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 PRAP1Q96NZ9 151 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 SERPINI1Q99574 410 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 ATP5SQ99766 215 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 SLC35A5Q9BS91 424 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 MND1Q9BWT6 205 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 ACTR3CQ9C0K3 210 aaPredicted RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 C1orf109Q9NX04 203 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TREM2Q9NZC2 230 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 ZNF225Q9UK10 706 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 OR52A1Q9UKL2 312 aa3.1□□□□□ -1.91
CCDC54-201ENST00000261058 POLR3HQ9Y535 204 aaPredicted RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 TDRD6O60522 2096 aaKnown RBP3.1□□□□□ -1.91
CCDC54-201ENST00000261058 SMIM28A0A1B0GU29 152 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 SULT2B1O00204 365 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PLPP3O14495 311 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 BHLHE40O14503 412 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 BANF1O75531 89 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 DCTN3O75935 186 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PSMG1O95456 288 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 CD160O95971 181 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 SERPINA1P01009 418 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 TIMP1P01033 207 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PCCAP05165 728 aaPredicted RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PET100P0DJ07 73 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 GTF2F2P13984 249 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 UCHL3P15374 230 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 VDAC1P21796 283 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PSMB5P28074 263 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 HLCSP50747 726 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 IDH3GP51553 393 aaPredicted RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 XKP51811 444 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 FGF8P55075 233 aaPredicted RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 CLDN6P56747 220 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 NUTF2P61970 127 aaKnown RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PTGES3Q15185 160 aaKnown RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 RBM48Q5RL73 367 aaKnown RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 ADNP2Q6IQ32 1131 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 DNM1P46Q6ZS02 220 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 SSX6Q7RTT6 188 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 LYG2Q86SG7 212 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 Q8N402 240 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 MS4A15Q8N5U1 240 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 KIR3DL3Q8N743 410 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 HSD17B11Q8NBQ5 300 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 OR11L1Q8NGX0 322 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 OR5AK3PQ8NH89 298 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 LYPD6BQ8NI32 183 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 TFGQ92734 400 aaPredicted RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PPWD1Q96BP3 646 aaKnown RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 L3HYPDHQ96EM0 354 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 ITCHQ96J02 903 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 PLEKHF1Q96S99 279 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 STACQ99469 402 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 RNF2Q99496 336 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 RBBP8Q99708 897 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 ZNF670Q9BS34 389 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 ZNF385DQ9H6B1 395 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 BIN3Q9NQY0 253 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 BABAM2Q9NXR7 383 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 IL17CQ9P0M4 197 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 FBXL3Q9UKT7 428 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 UBQLN1Q9UMX0 589 aaKnown RBP3.09□□□□□ -1.92
CCDC54-201ENST00000261058 COPS3Q9UNS2 423 aa3.09□□□□□ -1.92
CCDC54-201ENST00000261058 KCNIP3Q9Y2W7 256 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms