RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 NUDT7P0C024 238 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 NLRP6P59044 892 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 PSMC1P62191 440 aaKnown RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 RBL2Q08999 1139 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 GNL2Q13823 731 aaKnown RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 KCTD2Q14681 263 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 VPS72Q15906 364 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 ODR4Q5SWX8 454 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 NBPF6Q5VWK0 638 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 C9orf131Q5VYM1 1079 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 NBPF5PQ86XG9 351 aaPredicted RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 ABTB2Q8N961 1025 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 SVIPQ8NHG7 77 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 ADAMTS19Q8TE59 1207 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 TSC1Q92574 1164 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 TSR2Q969E8 191 aaKnown RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 NBPF4Q96M43 638 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 FRMD6Q96NE9 622 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 CRBNQ96SW2 442 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 MYCBPQ99417 103 aaPredicted RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 TMX1Q9H3N1 280 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 CAPN10Q9HC96 672 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 CWC25Q9NXE8 425 aaPredicted RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 NOL7Q9UMY1 257 aaKnown RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 LHX6Q9UPM6 363 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 PRKAB1Q9Y478 270 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 CASZ1Q86V15 1759 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 PARP4Q9UKK3 1724 aaKnown RBP4.31□□□□□ -1.72
SMG6-208ENST00000570874 TOGARAM1Q9Y4F4 1720 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 PLCH1Q4KWH8 1693 aa4.31□□□□□ -1.72
SMG6-208ENST00000570874 SBNO1A3KN83 1393 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 FLT4P35916 1363 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 SYNRGQ9UMZ2 1314 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 MAPK8IP3Q9UPT6 1336 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 ADAMTS7Q9UKP4 1686 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 ENPP3O14638 875 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 PPP1R12AO14974 1030 aaPredicted RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 HMMRO75330 724 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 LDHCP07864 332 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 HOXC9P31274 260 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 RIPK4P57078 832 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 TAGLNQ01995 201 aaKnown RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 NEXNQ0ZGT2 675 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 DCTN1Q14203 1278 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 MAP9Q49MG5 647 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 TTC39BQ5VTQ0 682 aaPredicted RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 DMRTA1Q5VZB9 504 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 SULT6B1Q6IMI4 303 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 NBPF10Q6P3W6 841 aaKnown RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 SKAP1Q86WV1 359 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 MICALL2Q8IY33 904 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 SAMD3Q8N6K7 520 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 USHBP1Q8N6Y0 703 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 LTV1Q96GA3 475 aaPredicted RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 NEUROD6Q96NK8 337 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 MPHOSPH6Q99547 160 aaKnown RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 MFRPQ9BY79 579 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 TGIF2Q9GZN2 237 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 CCSER2Q9H7U1 834 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 AVENQ9NQS1 362 aaPredicted RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 POLR3EQ9NVU0 708 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 PPP4R2Q9NY27 417 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 PUF60Q9UHX1 559 aaKnown RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 KLF15Q9UIH9 416 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 MRPL42Q9Y6G3 142 aaKnown RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 COL16A1Q07092 1604 aaPredicted RBP4.3□□□□□ -1.72
SMG6-208ENST00000570874 TUBGCP6Q96RT7 1819 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 LAMB4A4D0S4 1761 aa4.3□□□□□ -1.72
SMG6-208ENST00000570874 LTBP4Q8N2S1 1624 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 FCHSD2O94868 740 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 DNAJA1P31689 397 aaKnown RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 USP5P45974 858 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 AMPHP49418 695 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 CLK2P49760 499 aaKnown RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 EXOSC9Q06265 439 aaKnown RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 RAPGEF1Q13905 1077 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 ELOAQ14241 798 aaKnown RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 HIC1Q14526 733 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 BRD3Q15059 726 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 NFE2L2Q16236 605 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 CDC37Q16543 378 aaPredicted RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 WASHC4Q2M389 1173 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 PHLDB3Q6NSJ2 640 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 CC2D1AQ6P1N0 951 aaPredicted RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 KRT28Q7Z3Y7 464 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 ZSCAN30Q86W11 494 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 TTC30BQ8N4P2 665 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 RSPH1Q8WYR4 309 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 MRFAP1L1Q96HT8 127 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 AGBL1Q96MI9 1066 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 GMLQ99445 158 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 EYA1Q99502 592 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 REPIN1Q9BWE0 567 aaKnown RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 TTF2Q9UNY4 1162 aaKnown RBP4.29□□□□□ -1.72
SMG6-208ENST00000570874 NRAPQ86VF7 1730 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 DCCP43146 1447 aa4.29□□□□□ -1.72
SMG6-208ENST00000570874 ARHGEF10O15013 1369 aa4.28□□□□□ -1.72
SMG6-208ENST00000570874 MSH6P52701 1360 aa4.28□□□□□ -1.72
SMG6-208ENST00000570874 IGSF1Q8N6C5 1336 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms