RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 NUCB1Q02818 461 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 ANKRD45Q5TZF3 282 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 CC2D2BQ6DHV5 1058 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 PODXL2Q9NZ53 605 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 WWC3Q9ULE0 1092 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 DLEC1Q9Y238 1755 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 MYH3P11055 1940 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 XDHP47989 1333 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 WTIPA6NIX2 430 aaPredicted RBP10.42□□□□□ -0.74
SF3B3-212ENST00000568539 SNAP23O00161 211 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 SMARCA5O60264 1052 aaPredicted RBP10.42□□□□□ -0.74
SF3B3-212ENST00000568539 FGFR2P21802 821 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 PUM3Q15397 648 aaKnown RBP10.42□□□□□ -0.74
SF3B3-212ENST00000568539 TNNI3KQ59H18 835 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 CHD1LQ86WJ1 897 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 TMX4Q9H1E5 349 aaPredicted RBP10.42□□□□□ -0.74
SF3B3-212ENST00000568539 IL1RAPL2Q9NP60 686 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 GPR108Q9NPR9 543 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 ANKIB1Q9P2G1 1089 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 NSFL1CQ9UNZ2 370 aaKnown RBP10.42□□□□□ -0.74
SF3B3-212ENST00000568539 BCS1LQ9Y276 419 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 FPGT-TNNI3KV9GXZ4 949 aa10.42□□□□□ -0.74
SF3B3-212ENST00000568539 LRRC37AA6NMS7 1700 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 ATP2B4P23634 1241 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 UBE4AQ14139 1066 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 ATP2B3Q16720 1220 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 GRIPAP1Q4V328 841 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 CCDC93Q567U6 631 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 SOGA3Q5TF21 947 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 DPP8Q6V1X1 898 aaPredicted RBP10.41□□□□□ -0.74
SF3B3-212ENST00000568539 CLASRPQ8N2M8 674 aaKnown RBP10.41□□□□□ -0.74
SF3B3-212ENST00000568539 MPNDQ8N594 471 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 TBC1D16Q8TBP0 767 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 EAF2Q96CJ1 260 aaPredicted RBP10.41□□□□□ -0.74
SF3B3-212ENST00000568539 RTFDC1Q9BY42 306 aaPredicted RBP10.41□□□□□ -0.74
SF3B3-212ENST00000568539 AKAP2Q9Y2D5 859 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 LEMD3Q9Y2U8 911 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 ZNF609O15014 1411 aa10.41□□□□□ -0.74
SF3B3-212ENST00000568539 ZNF804BA4D1E1 1349 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 A0A1B0GUL7 405 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 UFL1O94874 794 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 TIMM10P62072 90 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 CHADLQ6NUI6 762 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 AACSQ86V21 672 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 RTKN2Q8IZC4 609 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 PELP1Q8IZL8 1130 aaKnown RBP10.4□□□□□ -0.74
SF3B3-212ENST00000568539 LPIN2Q92539 896 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 LNPKQ9C0E8 428 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 TLR7Q9NYK1 1049 aaKnown RBP10.4□□□□□ -0.74
SF3B3-212ENST00000568539 POLLQ9UGP5 575 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 GGA1Q9UJY5 639 aa10.4□□□□□ -0.74
SF3B3-212ENST00000568539 DUOX1Q9NRD9 1551 aa10.39□□□□□ -0.75
SF3B3-212ENST00000568539 IRS2Q9Y4H2 1338 aa10.39□□□□□ -0.75
SF3B3-212ENST00000568539 SLC5A1P13866 664 aa10.39□□□□□ -0.75
SF3B3-212ENST00000568539 KCNJ4P48050 445 aa10.39□□□□□ -0.75
SF3B3-212ENST00000568539 C15orf52Q6ZUT6 534 aaKnown RBP10.39□□□□□ -0.75
SF3B3-212ENST00000568539 C16orf71Q8IYS4 520 aaPredicted RBP10.39□□□□□ -0.75
SF3B3-212ENST00000568539 PSMD1Q99460 953 aa10.39□□□□□ -0.75
SF3B3-212ENST00000568539 CCDC8Q9H0W5 538 aaPredicted RBP10.39□□□□□ -0.75
SF3B3-212ENST00000568539 DBNLQ9UJU6 430 aaKnown RBP10.39□□□□□ -0.75
SF3B3-212ENST00000568539 FARP1Q9Y4F1 1045 aaPredicted RBP10.39□□□□□ -0.75
SF3B3-212ENST00000568539 LTBP1Q14766 1721 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 TAF1P21675 1872 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 SALL3Q9BXA9 1300 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 SLX4Q8IY92 1834 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 C6orf229H3BNL8 230 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 GTPBP6O43824 516 aaPredicted RBP10.38□□□□□ -0.75
SF3B3-212ENST00000568539 IFIT2P09913 472 aaKnown RBP10.38□□□□□ -0.75
SF3B3-212ENST00000568539 IFIT1P09914 478 aaKnown RBP10.38□□□□□ -0.75
SF3B3-212ENST00000568539 PYGBP11216 843 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 YBX3P16989 372 aaKnown RBP eCLIP10.38□□□□□ -0.752e-6■□□□□ 8.5
SF3B3-212ENST00000568539 KLRK1P26718 216 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 PDE4AP27815 886 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 ADORA1P30542 326 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 FKBP4Q02790 459 aaKnown RBP eCLIP10.38□□□□□ -0.75
SF3B3-212ENST00000568539 GPR162Q16538 588 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 TXNRD3Q86VQ6 643 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 SUPT20HQ8NEM7 779 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 OTUD7AQ8TE49 926 aaPredicted RBP10.38□□□□□ -0.75
SF3B3-212ENST00000568539 XAGE2Q96GT9 111 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 NEUROD6Q96NK8 337 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 GPR101Q96P66 508 aaPredicted RBP10.38□□□□□ -0.75
SF3B3-212ENST00000568539 DBNDD2Q9BQY9 259 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 BCL11AQ9H165 835 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 MED23Q9ULK4 1368 aa10.38□□□□□ -0.75
SF3B3-212ENST00000568539 LTBP3Q9NS15 1303 aa10.37□□□□□ -0.75
SF3B3-212ENST00000568539 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.37□□□□□ -0.75
SF3B3-212ENST00000568539 NFKBIEO00221 500 aa10.37□□□□□ -0.75
SF3B3-212ENST00000568539 STK25O00506 426 aa10.37□□□□□ -0.75
SF3B3-212ENST00000568539 BRCA1P38398 1863 aaKnown RBP10.37□□□□□ -0.75
SF3B3-212ENST00000568539 FXR2P51116 673 aaKnown RBP eCLIP10.37□□□□□ -0.758e-7■■■□□ 19
SF3B3-212ENST00000568539 SKAP1Q86WV1 359 aa10.37□□□□□ -0.75
SF3B3-212ENST00000568539 ZFP91Q96JP5 570 aaPredicted RBP10.37□□□□□ -0.75
SF3B3-212ENST00000568539 EYA3Q99504 573 aa10.37□□□□□ -0.75
SF3B3-212ENST00000568539 SPEF2Q9C093 1822 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 MX1P20591 662 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 GYG1P46976 350 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 KIAA2012Q0VF49 1180 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 WASHC4Q2M389 1173 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 CAVIN4Q5BKX8 364 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms