RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SF3B3Q15393 1217 aaKnown RBP10.88□□□□□ -0.67
VPS39-207ENST00000563692 EAPPQ56P03 285 aaPredicted RBP10.88□□□□□ -0.67
VPS39-207ENST00000563692 CHADLQ6NUI6 762 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 LDHDQ86WU2 507 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 RILPL2Q969X0 211 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 TBC1D32Q96NH3 1257 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 ECHDC1Q9NTX5 307 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 FBXO3Q9UK99 471 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 GJA3Q9Y6H8 435 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 CCDC88AQ3V6T2 1871 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 WDR90Q96KV7 1748 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 SASH1O94885 1247 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 EPHX2P34913 555 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 IL15P40933 162 aaPredicted RBP10.87□□□□□ -0.67
VPS39-207ENST00000563692 AOC3Q16853 763 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 CCDC152Q4G0S7 254 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 AACSQ86V21 672 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 PNMA8AQ86V59 439 aaPredicted RBP10.87□□□□□ -0.67
VPS39-207ENST00000563692 CNTROBQ8N137 903 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 SIL1Q9H173 461 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 TAF1DQ9H5J8 278 aaPredicted RBP10.87□□□□□ -0.67
VPS39-207ENST00000563692 CLEC11AQ9Y240 323 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 ANKRD36CQ5JPF3 1778 aa10.87□□□□□ -0.67
VPS39-207ENST00000563692 DICER1Q9UPY3 1922 aaKnown RBP10.86□□□□□ -0.67
VPS39-207ENST00000563692 SNED1Q8TER0 1413 aa10.86□□□□□ -0.67
VPS39-207ENST00000563692 PDE8AO60658 829 aa10.86□□□□□ -0.67
VPS39-207ENST00000563692 CIAO1O76071 339 aa10.86□□□□□ -0.67
VPS39-207ENST00000563692 REC8O95072 547 aa10.86□□□□□ -0.67
VPS39-207ENST00000563692 CSF1RP07333 972 aa10.86□□□□□ -0.67
VPS39-207ENST00000563692 IFIT5Q13325 482 aaKnown RBP10.86□□□□□ -0.67
VPS39-207ENST00000563692 TAF7LQ5H9L4 462 aa10.86□□□□□ -0.67
VPS39-207ENST00000563692 RTFDC1Q9BY42 306 aaPredicted RBP10.86□□□□□ -0.67
VPS39-207ENST00000563692 ZNRF3Q9ULT6 936 aa10.86□□□□□ -0.67
VPS39-207ENST00000563692 EYA2O00167 538 aa10.85□□□□□ -0.67
VPS39-207ENST00000563692 RBM25P49756 843 aaKnown RBP10.85□□□□□ -0.67
VPS39-207ENST00000563692 RPS8P62241 208 aaKnown RBP10.85□□□□□ -0.67
VPS39-207ENST00000563692 KLHDC4Q8TBB5 520 aa10.85□□□□□ -0.67
VPS39-207ENST00000563692 CELF1Q92879 486 aaKnown RBP10.85□□□□□ -0.67
VPS39-207ENST00000563692 EYA3Q99504 573 aa10.85□□□□□ -0.67
VPS39-207ENST00000563692 GPR108Q9NPR9 543 aa10.85□□□□□ -0.67
VPS39-207ENST00000563692 NSFL1CQ9UNZ2 370 aaKnown RBP10.85□□□□□ -0.67
VPS39-207ENST00000563692 ANKRD18BA2A2Z9 1011 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 G3V3G9 751 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 C6orf229H3BNL8 230 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 HTRA3P83110 453 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 KIAA2012Q0VF49 1180 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 TFCP2Q12800 502 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 TNIP1Q15025 636 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 DCAF8Q5TAQ9 597 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 PI4K2BQ8TCG2 481 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 EAF2Q96CJ1 260 aaPredicted RBP10.84□□□□□ -0.67
VPS39-207ENST00000563692 KLRG1Q96E93 195 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 CDC5LQ99459 802 aaKnown RBP10.84□□□□□ -0.67
VPS39-207ENST00000563692 CCDC8Q9H0W5 538 aaPredicted RBP10.84□□□□□ -0.67
VPS39-207ENST00000563692 CEP126Q9P2H0 1117 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 AKAP2Q9Y2D5 859 aa10.84□□□□□ -0.67
VPS39-207ENST00000563692 HIP1O00291 1037 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 CTSWP56202 376 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 WASHC4Q2M389 1173 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 TNNI3KQ59H18 835 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 TSHZ3Q63HK5 1081 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 CIAPIN1Q6FI81 312 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 SLC51AQ86UW1 340 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 ANKRD18AQ8IVF6 992 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 DNAJC5GQ8N7S2 189 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 RUFY2Q8WXA3 655 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 EVI5LQ96CN4 794 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 CCDC85AQ96PX6 553 aaPredicted RBP10.83□□□□□ -0.68
VPS39-207ENST00000563692 ANKIB1Q9P2G1 1089 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 FPGT-TNNI3KV9GXZ4 949 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 CEP350Q5VT06 3117 aa10.83□□□□□ -0.68
VPS39-207ENST00000563692 EPB41L2O43491 1005 aaKnown RBP10.82□□□□□ -0.68
VPS39-207ENST00000563692 POTEIP0CG38 1075 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 POTEJP0CG39 1038 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 MCCP23508 829 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 CHMLP26374 656 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 CXCL9Q07325 125 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 TTLL11Q8NHH1 800 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 NEUROD6Q96NK8 337 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 SEC31BQ9NQW1 1179 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 CREBZFQ9NS37 354 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 GGA1Q9UJY5 639 aa10.82□□□□□ -0.68
VPS39-207ENST00000563692 RAD17O75943 681 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 UFL1O94874 794 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 ATP5JP18859 108 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 ITGA6P23229 1130 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 SCNN1DP51172 638 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 GPSM2P81274 684 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 LDHAL6AQ6ZMR3 332 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 USP50Q70EL3 339 aaPredicted RBP10.81□□□□□ -0.68
VPS39-207ENST00000563692 ATG9AQ7Z3C6 839 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 ESYT1Q9BSJ8 1104 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 USP26Q9BXU7 913 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 ZC3H12CQ9C0D7 883 aaKnown RBP10.81□□□□□ -0.68
VPS39-207ENST00000563692 GPRC5DQ9NZD1 345 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 SCN4AP35499 1836 aa10.81□□□□□ -0.68
VPS39-207ENST00000563692 H7C1D1 291 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 RIMBP2O15034 1052 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 MAP4K4O95819 1239 aaPredicted RBP10.8□□□□□ -0.68
VPS39-207ENST00000563692 IGHMBP2P38935 993 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms