RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 SREBF2Q12772 1141 aa12.38□□□□□ -0.43
HERC1-209ENST00000560519 CSRNP1Q96S65 589 aa12.38□□□□□ -0.43
HERC1-209ENST00000560519 TNRC18O15417 2968 aaPredicted RBP12.38□□□□□ -0.43
HERC1-209ENST00000560519 SOX10P56693 466 aa12.37□□□□□ -0.43
HERC1-209ENST00000560519 NOM1Q5C9Z4 860 aaKnown RBP12.37□□□□□ -0.43
HERC1-209ENST00000560519 APOBEC3FQ8IUX4 373 aaKnown RBP12.37□□□□□ -0.43
HERC1-209ENST00000560519 CCDC85AQ96PX6 553 aaPredicted RBP12.37□□□□□ -0.43
HERC1-209ENST00000560519 GMLQ99445 158 aa12.37□□□□□ -0.43
HERC1-209ENST00000560519 STK31Q9BXU1 1019 aa12.37□□□□□ -0.43
HERC1-209ENST00000560519 COA1Q9GZY4 146 aa12.37□□□□□ -0.43
HERC1-209ENST00000560519 BSDC1Q9NW68 430 aaPredicted RBP12.37□□□□□ -0.43
HERC1-209ENST00000560519 HDAC9Q9UKV0 1011 aa12.37□□□□□ -0.43
HERC1-209ENST00000560519 MAP3K2Q9Y2U5 619 aa12.37□□□□□ -0.43
HERC1-209ENST00000560519 IGHMBP2P38935 993 aaKnown RBP12.36□□□□□ -0.43
HERC1-209ENST00000560519 DDX10Q13206 875 aaKnown RBP12.36□□□□□ -0.43
HERC1-209ENST00000560519 TTLL12Q14166 644 aaPredicted RBP12.36□□□□□ -0.43
HERC1-209ENST00000560519 STRIP1Q5VSL9 837 aa12.36□□□□□ -0.43
HERC1-209ENST00000560519 ELL2O00472 640 aaPredicted RBP12.35□□□□□ -0.43
HERC1-209ENST00000560519 CCT4P50991 539 aaKnown RBP12.35□□□□□ -0.43
HERC1-209ENST00000560519 DACT2Q5SW24 774 aa12.35□□□□□ -0.43
HERC1-209ENST00000560519 PRPF38BQ5VTL8 546 aaKnown RBP12.35□□□□□ -0.43
HERC1-209ENST00000560519 KSR2Q6VAB6 950 aa12.35□□□□□ -0.43
HERC1-209ENST00000560519 ARMC9Q7Z3E5 817 aa12.35□□□□□ -0.43
HERC1-209ENST00000560519 FBXW7Q969H0 707 aa12.35□□□□□ -0.43
HERC1-209ENST00000560519 LEMD3Q9Y2U8 911 aa12.35□□□□□ -0.43
HERC1-209ENST00000560519 OTOFQ9HC10 1997 aa12.34□□□□□ -0.43
HERC1-209ENST00000560519 APAF1O14727 1248 aa12.34□□□□□ -0.43
HERC1-209ENST00000560519 TTLL11Q8NHH1 800 aa12.34□□□□□ -0.43
HERC1-209ENST00000560519 ANKRD2Q9GZV1 360 aa12.34□□□□□ -0.43
HERC1-209ENST00000560519 MINPP1Q9UNW1 487 aa12.34□□□□□ -0.43
HERC1-209ENST00000560519 HPS5Q9UPZ3 1129 aa12.34□□□□□ -0.43
HERC1-209ENST00000560519 PI4KAP2A4QPH2 592 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 WNT10BO00744 389 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 ALDH1A1P00352 501 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 TM4SF4P48230 202 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 NBPF9Q3BBW0 867 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 PI4KAP1Q8N8J0 262 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 ZNF296Q8WUU4 475 aaPredicted RBP12.33□□□□□ -0.44
HERC1-209ENST00000560519 CFHR5Q9BXR6 569 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 MYH16Q9H6N6 1097 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 GREM2Q9H772 168 aa12.33□□□□□ -0.44
HERC1-209ENST00000560519 PRKRIP1Q9H875 184 aaPredicted RBP12.33□□□□□ -0.44
HERC1-209ENST00000560519 NEURL1BA8MQ27 555 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 UBE2Q2LH0YL09 131 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 SASH1O94885 1247 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 IGKV5-2P06315 115 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 KCNJ4P48050 445 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 FBXO46Q6PJ61 603 aaPredicted RBP12.32□□□□□ -0.44
HERC1-209ENST00000560519 C8orf58Q8NAV2 365 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 MPHOSPH8Q99549 860 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 PPP2R3BQ9Y5P8 575 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 ZNF804BA4D1E1 1349 aa12.32□□□□□ -0.44
HERC1-209ENST00000560519 GPR25O00155 361 aa12.31□□□□□ -0.44
HERC1-209ENST00000560519 MYO1BO43795 1136 aa12.31□□□□□ -0.44
HERC1-209ENST00000560519 UBE3BQ7Z3V4 1068 aa12.31□□□□□ -0.44
HERC1-209ENST00000560519 JARID2Q92833 1246 aaPredicted RBP12.31□□□□□ -0.44
HERC1-209ENST00000560519 TBC1D8O95759 1140 aa12.3□□□□□ -0.44
HERC1-209ENST00000560519 ITGA6P23229 1130 aa12.3□□□□□ -0.44
HERC1-209ENST00000560519 INHBEP58166 350 aa12.3□□□□□ -0.44
HERC1-209ENST00000560519 CWF19L2Q2TBE0 894 aaKnown RBP12.3□□□□□ -0.44
HERC1-209ENST00000560519 TWISTNBQ3B726 338 aaPredicted RBP12.3□□□□□ -0.44
HERC1-209ENST00000560519 TTLL5Q6EMB2 1281 aa12.3□□□□□ -0.44
HERC1-209ENST00000560519 MOB2Q70IA6 237 aa12.3□□□□□ -0.44
HERC1-209ENST00000560519 KIAA0825Q8IV33 1275 aa12.3□□□□□ -0.44
HERC1-209ENST00000560519 PLA2G12BQ9BX93 195 aa12.3□□□□□ -0.44
HERC1-209ENST00000560519 MANSC4A6NHS7 340 aaPredicted RBP12.29□□□□□ -0.44
HERC1-209ENST00000560519 UNCXA6NJT0 531 aa12.29□□□□□ -0.44
HERC1-209ENST00000560519 PPP1R12BO60237 982 aaPredicted RBP12.29□□□□□ -0.44
HERC1-209ENST00000560519 FKTNO75072 461 aa12.29□□□□□ -0.44
HERC1-209ENST00000560519 ZBTB48P10074 688 aaPredicted RBP12.29□□□□□ -0.44
HERC1-209ENST00000560519 CCDC27Q2M243 656 aa12.29□□□□□ -0.44
HERC1-209ENST00000560519 GCC1Q96CN9 775 aa12.29□□□□□ -0.44
HERC1-209ENST00000560519 ANGEL1Q9UNK9 670 aaKnown RBP12.29□□□□□ -0.44
HERC1-209ENST00000560519 SCAF8Q9UPN6 1271 aaKnown RBP12.29□□□□□ -0.44
HERC1-209ENST00000560519 SSC5DA1L4H1 1573 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 ANKRD18BA2A2Z9 1011 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 H7C1W4 665 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 GTF2IP78347 998 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 MKRN3Q13064 507 aaKnown RBP12.28□□□□□ -0.44
HERC1-209ENST00000560519 GCKRQ14397 625 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 DLGAP5Q15398 846 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 PRAMEF18Q5VWM3 479 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 MXD3Q9BW11 206 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 MYH13Q9UKX3 1938 aa12.28□□□□□ -0.44
HERC1-209ENST00000560519 FKBP1AP62942 108 aaKnown RBP12.27□□□□□ -0.45
HERC1-209ENST00000560519 PTPN12Q05209 780 aaKnown RBP12.27□□□□□ -0.45
HERC1-209ENST00000560519 CHRNDQ07001 517 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 FLIIQ13045 1269 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 FKBP5Q13451 457 aaPredicted RBP12.27□□□□□ -0.45
HERC1-209ENST00000560519 MAP3K11Q16584 847 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 LDLRAD1Q5T700 205 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 SPRYD7Q5W111 196 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 ZNF804AQ7Z570 1209 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 TSPYL6Q8N831 410 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 MTMR14Q8NCE2 650 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 LINS1Q8NG48 757 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 TSR2Q969E8 191 aaKnown RBP12.27□□□□□ -0.45
HERC1-209ENST00000560519 CD209Q9NNX6 404 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 IL16Q14005 1332 aa12.27□□□□□ -0.45
HERC1-209ENST00000560519 SLC4A2P04920 1241 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms