RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 BSDC1Q9NW68 430 aaPredicted RBP12.14□□□□□ -0.47
SPG11-214ENST00000558989 HACL1Q9UJ83 578 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 XDHP47989 1333 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 ZBED9Q6R2W3 1325 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 SNAP23O00161 211 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 ECE2O60344 883 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 TAF5LO75529 589 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 LMOD1P29536 600 aaPredicted RBP12.14□□□□□ -0.47
SPG11-214ENST00000558989 EPS15P42566 896 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 HTRA3P83110 453 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 CCDC57Q2TAC2 916 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 CIAPIN1Q6FI81 312 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 KAZALD1Q96I82 304 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 TAF1DQ9H5J8 278 aaPredicted RBP12.14□□□□□ -0.47
SPG11-214ENST00000558989 BICC1Q9H694 974 aaKnown RBP12.14□□□□□ -0.47
SPG11-214ENST00000558989 U3KPZ7 1027 aaPredicted RBP12.14□□□□□ -0.47
SPG11-214ENST00000558989 POLR2AP24928 1970 aaKnown RBP12.13□□□□□ -0.47
SPG11-214ENST00000558989 TESPA1A2RU30 521 aaPredicted RBP12.13□□□□□ -0.47
SPG11-214ENST00000558989 IQCA1LA6NCM1 817 aa12.13□□□□□ -0.47
SPG11-214ENST00000558989 EPHX2P34913 555 aa12.13□□□□□ -0.47
SPG11-214ENST00000558989 KCNJ4P48050 445 aa12.13□□□□□ -0.47
SPG11-214ENST00000558989 FBXW7Q969H0 707 aa12.13□□□□□ -0.47
SPG11-214ENST00000558989 API5Q9BZZ5 524 aaKnown RBP12.13□□□□□ -0.47
SPG11-214ENST00000558989 USP44Q9H0E7 712 aa12.13□□□□□ -0.47
SPG11-214ENST00000558989 KDM4CQ9H3R0 1056 aa12.13□□□□□ -0.47
SPG11-214ENST00000558989 ZBTB12Q9Y330 459 aaPredicted RBP12.13□□□□□ -0.47
SPG11-214ENST00000558989 SHTN1A0MZ66 631 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 HSPA6P17066 643 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 ATP2B4P23634 1241 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 GMPSP49915 693 aaPredicted RBP12.12□□□□□ -0.47
SPG11-214ENST00000558989 CCT4P50991 539 aaKnown RBP12.12□□□□□ -0.47
SPG11-214ENST00000558989 CHRNDQ07001 517 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 SMC1BQ8NDV3 1235 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 KLHDC4Q8TBB5 520 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 L3MBTL3Q96JM7 780 aaPredicted RBP12.12□□□□□ -0.47
SPG11-214ENST00000558989 VPS33BQ9H267 617 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 CNNM1Q9NRU3 951 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 RTL9Q8NET4 1388 aa12.12□□□□□ -0.47
SPG11-214ENST00000558989 A6NJR5 290 aa12.11□□□□□ -0.47
SPG11-214ENST00000558989 PSMD14O00487 310 aa12.11□□□□□ -0.47
SPG11-214ENST00000558989 KLRK1P26718 216 aa12.11□□□□□ -0.47
SPG11-214ENST00000558989 SCNN1DP51172 638 aa12.11□□□□□ -0.47
SPG11-214ENST00000558989 KIF16BQ96L93 1317 aa12.11□□□□□ -0.47
SPG11-214ENST00000558989 YTHDC1Q96MU7 727 aaKnown RBP12.11□□□□□ -0.47
SPG11-214ENST00000558989 PUS3Q9BZE2 481 aaKnown RBP12.11□□□□□ -0.47
SPG11-214ENST00000558989 LDHAL6AQ6ZMR3 332 aa12.11□□□□□ -0.47
SPG11-214ENST00000558989 TXNRD3Q86VQ6 643 aa12.11□□□□□ -0.47
SPG11-214ENST00000558989 TRAK2O60296 914 aa12.1□□□□□ -0.47
SPG11-214ENST00000558989 UBTFL1P0CB47 393 aaPredicted RBP12.1□□□□□ -0.47
SPG11-214ENST00000558989 TNIP1Q15025 636 aa12.1□□□□□ -0.47
SPG11-214ENST00000558989 ANKRD44Q8N8A2 993 aa12.1□□□□□ -0.47
SPG11-214ENST00000558989 PSME4Q14997 1843 aa12.1□□□□□ -0.47
SPG11-214ENST00000558989 ZNF804BA4D1E1 1349 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 UTYO14607 1347 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 STK25O00506 426 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 RIOK3O14730 519 aaKnown RBP12.09□□□□□ -0.47
SPG11-214ENST00000558989 TRIM27P14373 513 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 RBM26Q5T8P6 1007 aaKnown RBP12.09□□□□□ -0.47
SPG11-214ENST00000558989 MAP1SQ66K74 1059 aaPredicted RBP12.09□□□□□ -0.47
SPG11-214ENST00000558989 CHADLQ6NUI6 762 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 MEIS3Q99687 375 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 ANKRD2Q9GZV1 360 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 IPO8O15397 1037 aaKnown RBP12.09□□□□□ -0.47
SPG11-214ENST00000558989 FSTL1Q12841 308 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 ATF7IPQ6VMQ6 1270 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 MXD3Q9BW11 206 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 GPRC5DQ9NZD1 345 aa12.09□□□□□ -0.47
SPG11-214ENST00000558989 CNOT7Q9UIV1 285 aaKnown RBP12.09□□□□□ -0.47
SPG11-214ENST00000558989 LRRFIP2Q9Y608 721 aaKnown RBP12.09□□□□□ -0.47
SPG11-214ENST00000558989 LRRC24Q50LG9 513 aa12.08□□□□□ -0.48
SPG11-214ENST00000558989 ZKSCAN2Q63HK3 967 aa12.08□□□□□ -0.48
SPG11-214ENST00000558989 MICALL2Q8IY33 904 aa12.08□□□□□ -0.48
SPG11-214ENST00000558989 GZF1Q9H116 711 aaPredicted RBP12.08□□□□□ -0.48
SPG11-214ENST00000558989 JAG2Q9Y219 1238 aa12.08□□□□□ -0.48
SPG11-214ENST00000558989 SAMD7Q7Z3H4 446 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 LDHDQ86WU2 507 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 SIL1Q9H173 461 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 ZBTB47Q9UFB7 747 aaPredicted RBP12.07□□□□□ -0.48
SPG11-214ENST00000558989 LEMD3Q9Y2U8 911 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 ADAMTSL1Q8N6G6 1762 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 MED23Q9ULK4 1368 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 FMR1Q06787 632 aaKnown RBP eCLIP12.07□□□□□ -0.48
SPG11-214ENST00000558989 RABL6Q3YEC7 729 aaPredicted RBP12.07□□□□□ -0.48
SPG11-214ENST00000558989 TBC1D10BQ4KMP7 808 aaPredicted RBP12.07□□□□□ -0.48
SPG11-214ENST00000558989 PNMA8AQ86V59 439 aaPredicted RBP12.07□□□□□ -0.48
SPG11-214ENST00000558989 TMEM57Q8N5G2 664 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 TRPM4Q8TD43 1214 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 ARHGAP45Q92619 1136 aa12.07□□□□□ -0.48
SPG11-214ENST00000558989 H7C1D1 291 aa12.06□□□□□ -0.48
SPG11-214ENST00000558989 POLA2Q14181 598 aa12.06□□□□□ -0.48
SPG11-214ENST00000558989 METTL24Q5JXM2 366 aa12.06□□□□□ -0.48
SPG11-214ENST00000558989 FTSJ3Q8IY81 847 aaKnown RBP12.06□□□□□ -0.48
SPG11-214ENST00000558989 ZNF646O15015 1829 aaPredicted RBP12.06□□□□□ -0.48
SPG11-214ENST00000558989 EGFRP00533 1210 aa12.05□□□□□ -0.48
SPG11-214ENST00000558989 APLP1P51693 650 aa12.05□□□□□ -0.48
SPG11-214ENST00000558989 INTS3Q68E01 1043 aaKnown RBP12.05□□□□□ -0.48
SPG11-214ENST00000558989 CNTROBQ8N137 903 aa12.05□□□□□ -0.48
SPG11-214ENST00000558989 ADARB2Q9NS39 739 aaKnown RBP12.05□□□□□ -0.48
SPG11-214ENST00000558989 PA2G4Q9UQ80 394 aaKnown RBP12.05□□□□□ -0.48
SPG11-214ENST00000558989 MYH13Q9UKX3 1938 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms