RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 LMTK3Q96Q04 1460 aa13.8□□□□□ -0.2
VIPAS39-211ENST00000557658 ADAMTS7Q9UKP4 1686 aa13.8□□□□□ -0.2
VIPAS39-211ENST00000557658 SLU7O95391 586 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 EXOSC10Q01780 885 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 ZRSR1Q15695 479 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 ZNF790Q6PG37 636 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 SDF4Q9BRK5 362 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 DSCC1Q9BVC3 393 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 HELLSQ9NRZ9 838 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 C5P01031 1676 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 SALL1Q9NSC2 1324 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 A0A087WWV3 80 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 GCP02774 474 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 RABL6Q3YEC7 729 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 SLFNL1Q499Z3 407 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 KMT5BQ4FZB7 885 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 ANKRD13DQ6ZTN6 518 aa13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 FMR1NBQ8N0W7 255 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 NAP1L2Q9ULW6 460 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 AFDNP55196 1824 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-211ENST00000557658 DHX8Q14562 1220 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 ESCO1Q5FWF5 840 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 TAF3Q5VWG9 929 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 ZNF274Q96GC6 653 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 PALLDQ8WX93 1383 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 A0A1W2PQ27 194 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 A0A1W2PQ64 194 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 A0A1W2PQD8 194 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 GUCY1B3Q02153 619 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 SLC39A6Q13433 755 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 ADALQ6DHV7 355 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 CCDC150Q8NCX0 1101 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 BCL11BQ9C0K0 894 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 RTEL1Q9NZ71 1219 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 PCDHA7Q9UN72 937 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 V9GYY5 206 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 CAMTA1Q9Y6Y1 1673 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 UBE3BQ7Z3V4 1068 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 TICAM2Q86XR7 235 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 FBXW7Q969H0 707 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 BPIFA3Q9BQP9 254 aa13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 NCOA5Q9HCD5 579 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-211ENST00000557658 E7EWF7 191 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 NRDCO43847 1150 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 PDIA3P30101 505 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 ELF2Q15723 593 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 ILDR1Q86SU0 546 aaPredicted RBP13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 NBPF11Q86T75 865 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 CARMIL3Q8ND23 1372 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 SLFN14P0C7P3 912 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 TPM4P67936 248 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 SF3A1Q15459 793 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 ERCC4Q92889 916 aaPredicted RBP13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 PAG1Q9NWQ8 432 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 KIAA1468Q9P260 1216 aa13.77□□□□□ -0.21
VIPAS39-211ENST00000557658 ABCC6O95255 1503 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 A0A1B0GVL5 298 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 GOLIM4O00461 696 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 STK38Q15208 465 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 FBXO38Q6PIJ6 1188 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 SLC52A2Q9HAB3 445 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 SLIT3O75094 1523 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 PSDA5PKW4 1024 aaPredicted RBP13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 SMC2O95347 1197 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 TUBB4AP04350 444 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 ZMYM1Q5SVZ6 1142 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 KCNG4Q8TDN1 519 aa13.76□□□□□ -0.21
VIPAS39-211ENST00000557658 SFPQP23246 707 aaKnown RBP eCLIP13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 KCNJ6P48051 423 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 NDUFA8P51970 172 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 TERF2Q15554 542 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 TMC6Q7Z403 805 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 LINC00301Q8NCQ3 95 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 FAM53CQ9NYF3 392 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 CCDC9Q9Y3X0 531 aaKnown RBP13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 SCN11AQ9UI33 1791 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 A0A087WZG4 1122 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 HSPD1P10809 573 aaKnown RBP13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 DPCR1Q3MIW9 517 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 E4F1Q66K89 784 aaPredicted RBP13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 PPP1R13BQ96KQ4 1090 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 NEUROD6Q96NK8 337 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 XPO4Q9C0E2 1151 aaKnown RBP13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 L2HGDHQ9H9P8 463 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 IFNKQ9P0W0 207 aa13.75□□□□□ -0.21
VIPAS39-211ENST00000557658 PPFIA3O75145 1194 aa13.74□□□□□ -0.21
VIPAS39-211ENST00000557658 YEATS4O95619 227 aa13.74□□□□□ -0.21
VIPAS39-211ENST00000557658 ERBB3P21860 1342 aa13.74□□□□□ -0.21
VIPAS39-211ENST00000557658 FDPSP14324 419 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-211ENST00000557658 ZNF496Q96IT1 587 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-211ENST00000557658 POLR3EQ9NVU0 708 aa13.74□□□□□ -0.21
VIPAS39-211ENST00000557658 FER1L4A9Z1Z3 1794 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 ARFGEF2Q9Y6D5 1785 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 SLC3A2P08195 630 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 SNRPA1P09661 255 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 NLRP12P59046 1061 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 ARMCX5Q6P1M9 558 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 LMBR1LQ6UX01 489 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 CHST3Q7LGC8 479 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms