RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KIF3CO14782 793 aa16.89■□□□□ 0.29
SHMT2-228ENST00000557302 IL15P40933 162 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-228ENST00000557302 ATP8B2P98198 1209 aa16.89■□□□□ 0.29
SHMT2-228ENST00000557302 C15orf52Q6ZUT6 534 aaKnown RBP16.89■□□□□ 0.29
SHMT2-228ENST00000557302 ATG9AQ7Z3C6 839 aa16.89■□□□□ 0.29
SHMT2-228ENST00000557302 PODNQ7Z5L7 613 aa16.89■□□□□ 0.29
SHMT2-228ENST00000557302 COA1Q9GZY4 146 aa16.89■□□□□ 0.29
SHMT2-228ENST00000557302 WDR90Q96KV7 1748 aa16.89■□□□□ 0.29
SHMT2-228ENST00000557302 A0A1B0GUL6 1792 aa16.88■□□□□ 0.29
SHMT2-228ENST00000557302 PDE8BO95263 885 aa16.88■□□□□ 0.29
SHMT2-228ENST00000557302 VGLL2Q8N8G2 317 aa16.88■□□□□ 0.29
SHMT2-228ENST00000557302 ZBTB40Q9NUA8 1239 aa16.88■□□□□ 0.29
SHMT2-228ENST00000557302 POTECB2RU33 542 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 PSMD14O00487 310 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 LMOD1P29536 600 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-228ENST00000557302 POLA2Q14181 598 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 PUM3Q15397 648 aaKnown RBP16.87■□□□□ 0.29
SHMT2-228ENST00000557302 CEP85Q6P2H3 762 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 ZNF804AQ7Z570 1209 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 C16orf71Q8IYS4 520 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-228ENST00000557302 SSH3Q8TE77 659 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 KCNQ5Q9NR82 932 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 CEP126Q9P2H0 1117 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 IRS2Q9Y4H2 1338 aa16.87■□□□□ 0.29
SHMT2-228ENST00000557302 GMPSP49915 693 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-228ENST00000557302 HACL1Q9UJ83 578 aa16.86■□□□□ 0.29
SHMT2-228ENST00000557302 SCNN1DP51172 638 aa16.85■□□□□ 0.29
SHMT2-228ENST00000557302 G3BP1Q13283 466 aaKnown RBP eCLIP16.85■□□□□ 0.291e-7■■□□□ 13.4
SHMT2-228ENST00000557302 CD209Q9NNX6 404 aa16.85■□□□□ 0.29
SHMT2-228ENST00000557302 USP17L3A6NCW0 530 aa16.84■□□□□ 0.29
SHMT2-228ENST00000557302 USP17L4A6NCW7 530 aa16.84■□□□□ 0.29
SHMT2-228ENST00000557302 VIL1P09327 827 aaKnown RBP16.84■□□□□ 0.29
SHMT2-228ENST00000557302 IFIT1P09914 478 aaKnown RBP16.84■□□□□ 0.29
SHMT2-228ENST00000557302 SLC5A1P13866 664 aa16.84■□□□□ 0.29
SHMT2-228ENST00000557302 FGFR2P21802 821 aa16.84■□□□□ 0.29
SHMT2-228ENST00000557302 RPS12P25398 132 aaKnown RBP16.84■□□□□ 0.29
SHMT2-228ENST00000557302 HIBADHP31937 336 aaKnown RBP16.84■□□□□ 0.29
SHMT2-228ENST00000557302 GYG1P46976 350 aa16.84■□□□□ 0.29
SHMT2-228ENST00000557302 USP17L1Q7RTZ2 530 aa16.84■□□□□ 0.29
SHMT2-228ENST00000557302 LPIN2Q92539 896 aa16.84■□□□□ 0.29
SHMT2-228ENST00000557302 TAF1DQ9H5J8 278 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-228ENST00000557302 TOMM70O94826 608 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 EPHX2P34913 555 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 OS9Q13438 667 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-228ENST00000557302 ATP2B3Q16720 1220 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 CAVIN4Q5BKX8 364 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 VPS37DQ86XT2 251 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 RPAP2Q8IXW5 612 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-228ENST00000557302 DPF2Q92785 391 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 FBXW7Q969H0 707 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 FAM84BQ96KN1 310 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-228ENST00000557302 GPRC5DQ9NZD1 345 aa16.83■□□□□ 0.28
SHMT2-228ENST00000557302 ZBTB12Q9Y330 459 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-228ENST00000557302 SCN9AQ15858 1988 aa16.82■□□□□ 0.28
SHMT2-228ENST00000557302 SCN4AP35499 1836 aa16.82■□□□□ 0.28
SHMT2-228ENST00000557302 HMMRO75330 724 aa16.82■□□□□ 0.28
SHMT2-228ENST00000557302 SURF6O75683 361 aaKnown RBP16.82■□□□□ 0.28
SHMT2-228ENST00000557302 IL1R1P14778 569 aa16.82■□□□□ 0.28
SHMT2-228ENST00000557302 EPS15P42566 896 aa16.82■□□□□ 0.28
SHMT2-228ENST00000557302 TFCP2Q12800 502 aa16.82■□□□□ 0.28
SHMT2-228ENST00000557302 STRIP1Q5VSL9 837 aa16.82■□□□□ 0.28
SHMT2-228ENST00000557302 RSBN1LQ6PCB5 846 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-228ENST00000557302 GTF2IP78347 998 aa16.81■□□□□ 0.28
SHMT2-228ENST00000557302 TTLL5Q6EMB2 1281 aa16.81■□□□□ 0.28
SHMT2-228ENST00000557302 FBXO33Q7Z6M2 555 aa16.81■□□□□ 0.28
SHMT2-228ENST00000557302 PNMA8AQ86V59 439 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-228ENST00000557302 AGBL3Q8NEM8 1001 aa16.81■□□□□ 0.28
SHMT2-228ENST00000557302 RBM46Q8TBY0 533 aaKnown RBP16.81■□□□□ 0.28
SHMT2-228ENST00000557302 AKAP2Q9Y2D5 859 aa16.81■□□□□ 0.28
SHMT2-228ENST00000557302 NOP58Q9Y2X3 529 aaKnown RBP16.81■□□□□ 0.28
SHMT2-228ENST00000557302 ZNF609O15014 1411 aa16.8■□□□□ 0.28
SHMT2-228ENST00000557302 MYO3BQ8WXR4 1341 aa16.8■□□□□ 0.28
SHMT2-228ENST00000557302 H7C1D1 291 aa16.8■□□□□ 0.28
SHMT2-228ENST00000557302 EAPPQ56P03 285 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-228ENST00000557302 DACT2Q5SW24 774 aa16.8■□□□□ 0.28
SHMT2-228ENST00000557302 MICALL2Q8IY33 904 aa16.8■□□□□ 0.28
SHMT2-228ENST00000557302 TDRD7Q8NHU6 1098 aaKnown RBP16.8■□□□□ 0.28
SHMT2-228ENST00000557302 ADARB2Q9NS39 739 aaKnown RBP16.8■□□□□ 0.28
SHMT2-228ENST00000557302 CNOT7Q9UIV1 285 aaKnown RBP16.8■□□□□ 0.28
SHMT2-228ENST00000557302 SASH1O94885 1247 aa16.79■□□□□ 0.28
SHMT2-228ENST00000557302 BCAMP50895 628 aa16.79■□□□□ 0.28
SHMT2-228ENST00000557302 USP50Q70EL3 339 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-228ENST00000557302 CRBNQ96SW2 442 aa16.79■□□□□ 0.28
SHMT2-228ENST00000557302 SUPT16HQ9Y5B9 1047 aaKnown RBP16.79■□□□□ 0.28
SHMT2-228ENST00000557302 A0A1B0GUL7 405 aa16.78■□□□□ 0.28
SHMT2-228ENST00000557302 FRAT2O75474 233 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-228ENST00000557302 HSP90AB4PQ58FF6 505 aa16.78■□□□□ 0.28
SHMT2-228ENST00000557302 LDHDQ86WU2 507 aa16.78■□□□□ 0.28
SHMT2-228ENST00000557302 SIRT2Q8IXJ6 389 aa16.78■□□□□ 0.28
SHMT2-228ENST00000557302 SMC1BQ8NDV3 1235 aa16.78■□□□□ 0.28
SHMT2-228ENST00000557302 GMLQ99445 158 aa16.78■□□□□ 0.28
SHMT2-228ENST00000557302 MXD3Q9BW11 206 aa16.78■□□□□ 0.28
SHMT2-228ENST00000557302 PSME4Q14997 1843 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 SHTN1A0MZ66 631 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 USP17L8P0C7I0 530 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 POTEIP0CG38 1075 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 POTEJP0CG39 1038 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 TIMM10P62072 90 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 NEUROD6Q96NK8 337 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 GNL3LQ9NVN8 582 aaKnown RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms