RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 GPRC5DQ9NZD1 345 aa13.33□□□□□ -0.28
LINC00239-201ENST00000556973 PSMD14O00487 310 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 SRGAP3O43295 1099 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 CIAO1O76071 339 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 PDE8BO95263 885 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 RPS12P25398 132 aaKnown RBP13.32□□□□□ -0.28
LINC00239-201ENST00000556973 EPS15P42566 896 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 GMPSP49915 693 aaPredicted RBP13.32□□□□□ -0.28
LINC00239-201ENST00000556973 METTL24Q5JXM2 366 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 PANK1Q8TE04 598 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 COPRSQ9NQ92 184 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 SCN9AQ15858 1988 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 IRS2Q9Y4H2 1338 aa13.32□□□□□ -0.28
LINC00239-201ENST00000556973 USP17L3A6NCW0 530 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 USP17L4A6NCW7 530 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 H7C1D1 291 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 SNAP23O00161 211 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 KLRK1P26718 216 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 USP50Q70EL3 339 aaPredicted RBP13.31□□□□□ -0.28
LINC00239-201ENST00000556973 USP17L1Q7RTZ2 530 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 VGLL2Q8N8G2 317 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 CD209Q9NNX6 404 aa13.31□□□□□ -0.28
LINC00239-201ENST00000556973 ADARB2Q9NS39 739 aaKnown RBP13.31□□□□□ -0.28
LINC00239-201ENST00000556973 CNOT7Q9UIV1 285 aaKnown RBP13.31□□□□□ -0.28
LINC00239-201ENST00000556973 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
LINC00239-201ENST00000556973 ATP8B2P98198 1209 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 PDE3AQ14432 1141 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 EAPPQ56P03 285 aaPredicted RBP13.3□□□□□ -0.28
LINC00239-201ENST00000556973 STRIP1Q5VSL9 837 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 RSBN1LQ6PCB5 846 aaPredicted RBP13.3□□□□□ -0.28
LINC00239-201ENST00000556973 ATG9AQ7Z3C6 839 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 ZNF804AQ7Z570 1209 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 LDHDQ86WU2 507 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 AGBL3Q8NEM8 1001 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 CHMP4BQ9H444 224 aaKnown RBP13.3□□□□□ -0.28
LINC00239-201ENST00000556973 CLEC11AQ9Y240 323 aa13.3□□□□□ -0.28
LINC00239-201ENST00000556973 IL1R1P14778 569 aa13.29□□□□□ -0.28
LINC00239-201ENST00000556973 IL15P40933 162 aaPredicted RBP13.29□□□□□ -0.28
LINC00239-201ENST00000556973 MVPQ14764 893 aaKnown RBP13.29□□□□□ -0.28
LINC00239-201ENST00000556973 TTLL5Q6EMB2 1281 aa13.29□□□□□ -0.28
LINC00239-201ENST00000556973 CHADLQ6NUI6 762 aa13.29□□□□□ -0.28
LINC00239-201ENST00000556973 SIL1Q9H173 461 aa13.29□□□□□ -0.28
LINC00239-201ENST00000556973 CEP126Q9P2H0 1117 aa13.29□□□□□ -0.28
LINC00239-201ENST00000556973 DDX19BQ9UMR2 479 aa13.29□□□□□ -0.28
LINC00239-201ENST00000556973 ADAMTSL1Q8N6G6 1762 aa13.29□□□□□ -0.28
LINC00239-201ENST00000556973 ZNF646O15015 1829 aaPredicted RBP13.28□□□□□ -0.28
LINC00239-201ENST00000556973 POTEIP0CG38 1075 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 POTEJP0CG39 1038 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 FGFR2P21802 821 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 HIBADHP31937 336 aaKnown RBP13.28□□□□□ -0.28
LINC00239-201ENST00000556973 PUM3Q15397 648 aaKnown RBP13.28□□□□□ -0.28
LINC00239-201ENST00000556973 CAVIN4Q5BKX8 364 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 MICALL2Q8IY33 904 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 FAM84BQ96KN1 310 aaPredicted RBP13.28□□□□□ -0.28
LINC00239-201ENST00000556973 PA2G4Q9UQ80 394 aaKnown RBP13.28□□□□□ -0.28
LINC00239-201ENST00000556973 COG6Q9Y2V7 657 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 MYO3BQ8WXR4 1341 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 ZNF609O15014 1411 aa13.28□□□□□ -0.28
LINC00239-201ENST00000556973 PNMA6EA0A0J9YXQ4 647 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 SASH1O94885 1247 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 IFIT1P09914 478 aaKnown RBP13.27□□□□□ -0.29
LINC00239-201ENST00000556973 HSPA6P17066 643 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 MMP14P50281 582 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 GTF2IP78347 998 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 DACT2Q5SW24 774 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 LPIN2Q92539 896 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 GMLQ99445 158 aa13.27□□□□□ -0.29
LINC00239-201ENST00000556973 SLC5A1P13866 664 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 GYG1P46976 350 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 G3BP1Q13283 466 aaKnown RBP eCLIP13.26□□□□□ -0.29
LINC00239-201ENST00000556973 POLA2Q14181 598 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 FBXO33Q7Z6M2 555 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 VPS37DQ86XT2 251 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 TDRD7Q8NHU6 1098 aaKnown RBP13.26□□□□□ -0.29
LINC00239-201ENST00000556973 SSH3Q8TE77 659 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 ZC3H15Q8WU90 426 aaKnown RBP13.26□□□□□ -0.29
LINC00239-201ENST00000556973 FBXW7Q969H0 707 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 C1orf115Q9H7X2 142 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 PGAP2Q9UHJ9 254 aa13.26□□□□□ -0.29
LINC00239-201ENST00000556973 USP17L8P0C7I0 530 aa13.25□□□□□ -0.29
LINC00239-201ENST00000556973 ZNF280AP59817 542 aaPredicted RBP13.25□□□□□ -0.29
LINC00239-201ENST00000556973 FKBP1AP62942 108 aaKnown RBP13.25□□□□□ -0.29
LINC00239-201ENST00000556973 SAMD7Q7Z3H4 446 aa13.25□□□□□ -0.29
LINC00239-201ENST00000556973 CNTROBQ8N137 903 aa13.25□□□□□ -0.29
LINC00239-201ENST00000556973 OGFOD1Q8N543 542 aa13.25□□□□□ -0.29
LINC00239-201ENST00000556973 ZBTB40Q9NUA8 1239 aa13.25□□□□□ -0.29
LINC00239-201ENST00000556973 AKAP2Q9Y2D5 859 aa13.25□□□□□ -0.29
LINC00239-201ENST00000556973 FAM205AQ6ZU69 1335 aa13.24□□□□□ -0.29
LINC00239-201ENST00000556973 SHTN1A0MZ66 631 aa13.24□□□□□ -0.29
LINC00239-201ENST00000556973 ITGBL1O95965 494 aaPredicted RBP13.24□□□□□ -0.29
LINC00239-201ENST00000556973 HIRAP54198 1017 aaPredicted RBP13.24□□□□□ -0.29
LINC00239-201ENST00000556973 ATP2B3Q16720 1220 aa13.24□□□□□ -0.29
LINC00239-201ENST00000556973 RBM26Q5T8P6 1007 aaKnown RBP13.24□□□□□ -0.29
LINC00239-201ENST00000556973 C20orf194Q5TEA3 1177 aa13.24□□□□□ -0.29
LINC00239-201ENST00000556973 RPAP2Q8IXW5 612 aaPredicted RBP13.24□□□□□ -0.29
LINC00239-201ENST00000556973 MXD3Q9BW11 206 aa13.24□□□□□ -0.29
LINC00239-201ENST00000556973 FRAT2O75474 233 aaPredicted RBP13.23□□□□□ -0.29
LINC00239-201ENST00000556973 BCAMP50895 628 aa13.23□□□□□ -0.29
LINC00239-201ENST00000556973 APLP1P51693 650 aa13.23□□□□□ -0.29
LINC00239-201ENST00000556973 TFCP2Q12800 502 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms