RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 HSP90B1P14625 803 aaKnown RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 MCM5P33992 734 aa9.26□□□□□ -0.93
LIMA1-216ENST00000552909 USP44Q9H0E7 712 aa9.26□□□□□ -0.93
LIMA1-216ENST00000552909 GPBP1L1Q9HC44 474 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 DDX19BQ9UMR2 479 aa9.26□□□□□ -0.93
LIMA1-216ENST00000552909 ZSCAN20P17040 1043 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 IARSP41252 1262 aaKnown RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 DPP8Q6V1X1 898 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 MPNDQ8N594 471 aa9.26□□□□□ -0.93
LIMA1-216ENST00000552909 SUCLG2Q96I99 432 aa9.26□□□□□ -0.93
LIMA1-216ENST00000552909 NMRK2Q9NPI5 230 aa9.26□□□□□ -0.93
LIMA1-216ENST00000552909 NSFL1CQ9UNZ2 370 aaKnown RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 DDX49Q9Y6V7 483 aaKnown RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 TIAM2Q8IVF5 1701 aa9.25□□□□□ -0.93
LIMA1-216ENST00000552909 ITGA6P23229 1130 aa9.25□□□□□ -0.93
LIMA1-216ENST00000552909 RBM25P49756 843 aaKnown RBP9.25□□□□□ -0.93
LIMA1-216ENST00000552909 GPSM2P81274 684 aa9.25□□□□□ -0.93
LIMA1-216ENST00000552909 LMBR1LQ6UX01 489 aa9.25□□□□□ -0.93
LIMA1-216ENST00000552909 BBXQ8WY36 941 aaPredicted RBP9.25□□□□□ -0.93
LIMA1-216ENST00000552909 GPR101Q96P66 508 aaPredicted RBP9.25□□□□□ -0.93
LIMA1-216ENST00000552909 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.25□□□□□ -0.93
LIMA1-216ENST00000552909 POLLQ9UGP5 575 aa9.25□□□□□ -0.93
LIMA1-216ENST00000552909 ZKSCAN5Q9Y2L8 839 aa9.25□□□□□ -0.93
LIMA1-216ENST00000552909 UTYO14607 1347 aa9.25□□□□□ -0.93
LIMA1-216ENST00000552909 GLTPD2A6NH11 291 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 DDNO94850 711 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-216ENST00000552909 ZNF445P59923 1031 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 AOC3Q16853 763 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 ANKRD18AQ8IVF6 992 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 PDLIM2Q96JY6 352 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 RTFDC1Q9BY42 306 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-216ENST00000552909 GTPBP4Q9BZE4 634 aaKnown RBP9.24□□□□□ -0.93
LIMA1-216ENST00000552909 TMX4Q9H1E5 349 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-216ENST00000552909 CHMP3Q9Y3E7 222 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 LRRC37AA6NMS7 1700 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 DUOX1Q9NRD9 1551 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 KIF3CO14782 793 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 ZBTB7BO15156 539 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-216ENST00000552909 LARGE2Q8N3Y3 721 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 RRAGCQ9HB90 399 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 SPEF2Q9C093 1822 aa9.24□□□□□ -0.93
LIMA1-216ENST00000552909 ZNF541Q9H0D2 1346 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 PPIP5K2O43314 1243 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 KIF20AO95235 890 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 GRIPAP1Q4V328 841 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 INTS3Q68E01 1043 aaKnown RBP9.23□□□□□ -0.93
LIMA1-216ENST00000552909 CLEC17AQ6ZS10 378 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 TMC4Q7Z404 712 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 ZNF594Q96JF6 807 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-216ENST00000552909 CDC5LQ99459 802 aaKnown RBP9.23□□□□□ -0.93
LIMA1-216ENST00000552909 BICC1Q9H694 974 aaKnown RBP9.23□□□□□ -0.93
LIMA1-216ENST00000552909 ZBTB40Q9NUA8 1239 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 MINPP1Q9UNW1 487 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 RTL9Q8NET4 1388 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 ZC3H4Q9UPT8 1303 aaKnown RBP9.23□□□□□ -0.93
LIMA1-216ENST00000552909 POTECB2RU33 542 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 C6orf229H3BNL8 230 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 FZD9O00144 591 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 PPP4R3BQ5MIZ7 849 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 TBC1D16Q8TBP0 767 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 BSDC1Q9NW68 430 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-216ENST00000552909 ANKIB1Q9P2G1 1089 aa9.23□□□□□ -0.93
LIMA1-216ENST00000552909 LTBP1Q14766 1721 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 SNAP23O00161 211 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 RIMBP2O15034 1052 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 CCT4P50991 539 aaKnown RBP9.22□□□□□ -0.93
LIMA1-216ENST00000552909 IFIT5Q13325 482 aaKnown RBP9.22□□□□□ -0.93
LIMA1-216ENST00000552909 DPY19L2Q6NUT2 758 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 ANKRD44Q8N8A2 993 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 JDP2Q8WYK2 163 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 MEIS3Q99687 375 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 CHMP4BQ9H444 224 aaKnown RBP9.22□□□□□ -0.93
LIMA1-216ENST00000552909 CCDC39Q9UFE4 941 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 ANKRD18BA2A2Z9 1011 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 LETM1O95202 739 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-216ENST00000552909 KIAA2012Q0VF49 1180 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 WASHC4Q2M389 1173 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 KCNQ5Q9NR82 932 aa9.22□□□□□ -0.93
LIMA1-216ENST00000552909 K7ELQ4 463 aaPredicted RBP9.21□□□□□ -0.94
LIMA1-216ENST00000552909 UFL1O94874 794 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 BAG4O95429 457 aaKnown RBP9.21□□□□□ -0.94
LIMA1-216ENST00000552909 IGHMBP2P38935 993 aaKnown RBP9.21□□□□□ -0.94
LIMA1-216ENST00000552909 CCDC57Q2TAC2 916 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 ZSCAN23Q3MJ62 389 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 RABL6Q3YEC7 729 aaPredicted RBP9.21□□□□□ -0.94
LIMA1-216ENST00000552909 HELBQ8NG08 1087 aaPredicted RBP9.21□□□□□ -0.94
LIMA1-216ENST00000552909 KLHDC4Q8TBB5 520 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 MPHOSPH8Q99549 860 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 RBSNQ9H1K0 784 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 DBNDD1Q9H9R9 158 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 FOXD4L1Q9NU39 408 aa9.21□□□□□ -0.94
LIMA1-216ENST00000552909 YDJCA8MPS7 323 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 TAF5LO75529 589 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 DOK7Q18PE1 504 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 NIM1KQ8IY84 436 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 SUPT20HQ8NEM7 779 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 PUS3Q9BZE2 481 aaKnown RBP9.2□□□□□ -0.94
LIMA1-216ENST00000552909 C1orf115Q9H7X2 142 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 GGA1Q9UJY5 639 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 XDHP47989 1333 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms