RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 FAM168AQ92567 244 aa4.31□□□□□ -1.72
LIMA1-209ENST00000552008 TOX2Q96NM4 488 aa4.31□□□□□ -1.72
LIMA1-209ENST00000552008 GDPD2Q9HCC8 539 aa4.31□□□□□ -1.72
LIMA1-209ENST00000552008 JAG2Q9Y219 1238 aa4.31□□□□□ -1.72
LIMA1-209ENST00000552008 RTCBQ9Y3I0 505 aaKnown RBP4.31□□□□□ -1.72
LIMA1-209ENST00000552008 MICAL2O94851 1124 aa4.3□□□□□ -1.72
LIMA1-209ENST00000552008 CFPP27918 469 aa4.3□□□□□ -1.72
LIMA1-209ENST00000552008 CILP2Q8IUL8 1156 aa4.3□□□□□ -1.72
LIMA1-209ENST00000552008 TMEM40Q8WWA1 233 aa4.3□□□□□ -1.72
LIMA1-209ENST00000552008 FAM84AQ96KN4 292 aa4.3□□□□□ -1.72
LIMA1-209ENST00000552008 USP20Q9Y2K6 914 aa4.3□□□□□ -1.72
LIMA1-209ENST00000552008 PALM3A6NDB9 673 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-209ENST00000552008 ATP11AP98196 1134 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 DGKZQ13574 1117 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 NFKBIBQ15653 356 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 CEP135Q66GS9 1140 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 LCNL1Q6ZST4 164 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 ATG4DQ86TL0 474 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-209ENST00000552008 WWC1Q8IX03 1113 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 LARGE2Q8N3Y3 721 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 BHLHE22Q8NFJ8 381 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-209ENST00000552008 ZSCAN18Q8TBC5 510 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-209ENST00000552008 KLHDC7BQ96G42 594 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 RUSC1Q9BVN2 902 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 SEC31BQ9NQW1 1179 aa4.29□□□□□ -1.72
LIMA1-209ENST00000552008 RBM19Q9Y4C8 960 aaKnown RBP4.29□□□□□ -1.72
LIMA1-209ENST00000552008 FAM95CA0A1B0GW59 222 aa4.28□□□□□ -1.72
LIMA1-209ENST00000552008 SMNDC1O75940 238 aaKnown RBP eCLIP4.28□□□□□ -1.72
LIMA1-209ENST00000552008 MESP2Q0VG99 397 aa4.28□□□□□ -1.72
LIMA1-209ENST00000552008 PAOXQ6QHF9 649 aa4.28□□□□□ -1.72
LIMA1-209ENST00000552008 CMTR1Q8N1G2 835 aaKnown RBP4.28□□□□□ -1.72
LIMA1-209ENST00000552008 OGFOD1Q8N543 542 aa4.28□□□□□ -1.72
LIMA1-209ENST00000552008 LMCD1Q9NZU5 365 aa4.28□□□□□ -1.72
LIMA1-209ENST00000552008 SLC5A6Q9Y289 635 aa4.28□□□□□ -1.72
LIMA1-209ENST00000552008 OPLAHO14841 1288 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 EPHA1P21709 976 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 ADMP35318 185 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 RAP1GAPP47736 663 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 MCM6Q14566 821 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 ZNF574Q6ZN55 896 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-209ENST00000552008 TTLL10Q6ZVT0 673 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 C1QL4Q86Z23 238 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 SIAH1Q8IUQ4 282 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 LRRC56Q8IYG6 542 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-209ENST00000552008 RGL4Q8IZJ4 473 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 SIX5Q8N196 739 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 CLUAP1Q96AJ1 413 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 ZNF594Q96JF6 807 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-209ENST00000552008 TBC1D32Q96NH3 1257 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 ZC3H7BQ9UGR2 993 aaKnown RBP4.27□□□□□ -1.73
LIMA1-209ENST00000552008 RAPGEFL1Q9UHV5 662 aa4.27□□□□□ -1.73
LIMA1-209ENST00000552008 NLRP12P59046 1061 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 ADAMTSL4Q6UY14 1074 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 ZAR1Q86SH2 424 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 PLEKHM2Q8IWE5 1019 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 GLIS3Q8NEA6 775 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 BCL7CQ8WUZ0 217 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-209ENST00000552008 SPACA7Q96KW9 195 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 ADAM19Q9H013 955 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 ALG2Q9H553 416 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 RC3H2Q9HBD1 1191 aaKnown RBP4.26□□□□□ -1.73
LIMA1-209ENST00000552008 LRRC4CQ9HCJ2 640 aa4.26□□□□□ -1.73
LIMA1-209ENST00000552008 SH2B1Q9NRF2 756 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-209ENST00000552008 MEGF11A6BM72 1044 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 USP17L3A6NCW0 530 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 USP17L4A6NCW7 530 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 FAM170BA6NMN3 283 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 FAM177BA6PVY3 158 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 DKK1O94907 266 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 ZSCAN22P10073 491 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-209ENST00000552008 COL13A1Q5TAT6 717 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-209ENST00000552008 USP17L2Q6R6M4 530 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 USP17L1Q7RTZ2 530 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 NLRP13Q86W25 1043 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 WFDC3Q8IUB2 231 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 C12orf50Q8NA57 414 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-209ENST00000552008 WNT8BQ93098 351 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 ARID3AQ99856 593 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 PRKAG2Q9UGJ0 569 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 KCNMB2Q9Y691 235 aa4.25□□□□□ -1.73
LIMA1-209ENST00000552008 LRRC10BA6NIK2 292 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 A6NJR5 290 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 H3BRJ5 948 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 PTPRAP18433 802 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 USP11P51784 963 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 PIP4K2BP78356 416 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 HYAL2Q12891 473 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 C11orf91Q3C1V1 193 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 DUSP27Q5VZP5 1158 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 NUTM2GQ5VZR2 741 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 SPRED2Q7Z698 418 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 PROSER2Q86WR7 435 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-209ENST00000552008 STK11IPQ8N1F8 1099 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 OR13H1Q8NG92 308 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 FBLIM1Q8WUP2 373 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 RASSF4Q9H2L5 321 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 QTRT2Q9H974 415 aaKnown RBP4.24□□□□□ -1.73
LIMA1-209ENST00000552008 OSGEPQ9NPF4 335 aa4.24□□□□□ -1.73
LIMA1-209ENST00000552008 ARID3CA6NKF2 412 aa4.23□□□□□ -1.73
LIMA1-209ENST00000552008 TSPAN15O95858 294 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms