RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 CHMP4AQ9BY43 222 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 DBF4Q9UBU7 674 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 ZBED9Q6R2W3 1325 aa11.13□□□□□ -0.63
CLSTN3-212ENST00000541770 NF2P35240 595 aa11.13□□□□□ -0.63
CLSTN3-212ENST00000541770 ZNF280AP59817 542 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-212ENST00000541770 FBXO46Q6PJ61 603 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-212ENST00000541770 TRMT2AQ8IZ69 625 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-212ENST00000541770 JARID2Q92833 1246 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-212ENST00000541770 PODXL2Q9NZ53 605 aa11.13□□□□□ -0.63
CLSTN3-212ENST00000541770 PITPNM2Q9BZ72 1349 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 USP17L3A6NCW0 530 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 USP17L4A6NCW7 530 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 NBPF9Q3BBW0 867 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 CCDC152Q4G0S7 254 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 USP17L1Q7RTZ2 530 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 ZBTB38Q8NAP3 1195 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 C8orf58Q8NAV2 365 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 MYD88Q99836 296 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 HYPKQ9NX55 129 aa11.12□□□□□ -0.63
CLSTN3-212ENST00000541770 FKTNO75072 461 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 HSP90B1P14625 803 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 TM4SF4P48230 202 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 SREBF2Q12772 1141 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 TWISTNBQ3B726 338 aaPredicted RBP11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 ANKRD18AQ8IVF6 992 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 TSPYL6Q8N831 410 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 GCC1Q96CN9 775 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 CDCA7LQ96GN5 454 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 MXD3Q9BW11 206 aa11.11□□□□□ -0.63
CLSTN3-212ENST00000541770 XDHP47989 1333 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 MYH3P11055 1940 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 ELL2O00472 640 aaPredicted RBP11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 PDE8AO60658 829 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 VAMP4O75379 141 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 SASH1O94885 1247 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 ATP2B4P23634 1241 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 EXOSC9Q06265 439 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 CCDC30Q5VVM6 783 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 ARMC9Q7Z3E5 817 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 PODNQ7Z5L7 613 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 OGFOD1Q8N543 542 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 GMLQ99445 158 aa11.1□□□□□ -0.63
CLSTN3-212ENST00000541770 ZNF609O15014 1411 aa11.09□□□□□ -0.63
CLSTN3-212ENST00000541770 PTPN12Q05209 780 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-212ENST00000541770 R3HDMLQ9H3Y0 253 aa11.09□□□□□ -0.63
CLSTN3-212ENST00000541770 PHAXQ9H814 394 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-212ENST00000541770 ANGEL1Q9UNK9 670 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-212ENST00000541770 TRIM17Q9Y577 477 aa11.09□□□□□ -0.63
CLSTN3-212ENST00000541770 ZNF646O15015 1829 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-212ENST00000541770 WTIPA6NIX2 430 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-212ENST00000541770 WNT10BO00744 389 aa11.08□□□□□ -0.64
CLSTN3-212ENST00000541770 CT47B1P0C2W7 299 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-212ENST00000541770 TRIM28Q13263 835 aaKnown RBP11.08□□□□□ -0.64
CLSTN3-212ENST00000541770 CWC25Q9NXE8 425 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-212ENST00000541770 FZD1Q9UP38 647 aa11.08□□□□□ -0.64
CLSTN3-212ENST00000541770 POTEFA5A3E0 1075 aa11.07□□□□□ -0.64
CLSTN3-212ENST00000541770 PCCAP05165 728 aaPredicted RBP11.07□□□□□ -0.64
CLSTN3-212ENST00000541770 NOM1Q5C9Z4 860 aaKnown RBP11.07□□□□□ -0.64
CLSTN3-212ENST00000541770 HABP4Q5JVS0 413 aaKnown RBP11.07□□□□□ -0.64
CLSTN3-212ENST00000541770 CCDC191Q8NCU4 936 aa11.07□□□□□ -0.64
CLSTN3-212ENST00000541770 CDC5LQ99459 802 aaKnown RBP11.07□□□□□ -0.64
CLSTN3-212ENST00000541770 MED23Q9ULK4 1368 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 ALDH1A1P00352 501 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 DACT2Q5SW24 774 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 SPRYD7Q5W111 196 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 APOBEC3FQ8IUX4 373 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 KIAA0825Q8IV33 1275 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 SLC10A4Q96EP9 437 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 STK31Q9BXU1 1019 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 ECM29Q5VYK3 1845 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 MYO3BQ8WXR4 1341 aa11.06□□□□□ -0.64
CLSTN3-212ENST00000541770 CCT4P50991 539 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-212ENST00000541770 TTLL5Q6EMB2 1281 aa11.05□□□□□ -0.64
CLSTN3-212ENST00000541770 MINPP1Q9UNW1 487 aa11.05□□□□□ -0.64
CLSTN3-212ENST00000541770 RBBP6Q7Z6E9 1792 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-212ENST00000541770 MANSC4A6NHS7 340 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 DDX58O95786 925 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 SLC4A2P04920 1241 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 CTSWP56202 376 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 GTF2IP78347 998 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 STRIP1Q5VSL9 837 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 INTS3Q68E01 1043 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 OTOP1Q7RTM1 612 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 TXNRD3Q86VQ6 643 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 IFNL1Q8IU54 200 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 CD99L2Q8TCZ2 262 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 METTL22Q9BUU2 404 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 COA1Q9GZY4 146 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 GREM2Q9H772 168 aa11.04□□□□□ -0.64
CLSTN3-212ENST00000541770 IGHMBP2P38935 993 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 KCNJ4P48050 445 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 INHBEP58166 350 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 DLGAP5Q15398 846 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 ALDH1L2Q3SY69 923 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 ERO1AQ96HE7 468 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 WNK4Q96J92 1243 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 CLMNQ96JQ2 1002 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 CFHR5Q9BXR6 569 aa11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 BSDC1Q9NW68 430 aaPredicted RBP11.03□□□□□ -0.64
CLSTN3-212ENST00000541770 MAP3K2Q9Y2U5 619 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms