RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 OTUD7AQ8TE49 926 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-204ENST00000540669 TLR7Q9NYK1 1049 aaKnown RBP13.01□□□□□ -0.33
VPS33A-204ENST00000540669 PIM2Q9P1W9 311 aa13.01□□□□□ -0.33
VPS33A-204ENST00000540669 CEP126Q9P2H0 1117 aa13.01□□□□□ -0.33
VPS33A-204ENST00000540669 TIAM2Q8IVF5 1701 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 A0A1B0GUL7 405 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 WTIPA6NIX2 430 aaPredicted RBP13□□□□□ -0.33
VPS33A-204ENST00000540669 ATP2B3Q16720 1220 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 GRIPAP1Q4V328 841 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 OLFM4Q6UX06 510 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 LPIN2Q92539 896 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 ZNF512BQ96KM6 892 aaPredicted RBP13□□□□□ -0.33
VPS33A-204ENST00000540669 PSMD1Q99460 953 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 IL1RAPL2Q9NP60 686 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 LEMD3Q9Y2U8 911 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 UTRNP46939 3433 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 MYH7P12883 1935 aa13□□□□□ -0.33
VPS33A-204ENST00000540669 PDS5AQ29RF7 1337 aaKnown RBP12.99□□□□□ -0.33
VPS33A-204ENST00000540669 SNAP23O00161 211 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 ANKRD45Q5TZF3 282 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 PLEKHM2Q8IWE5 1019 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 CLASRPQ8N2M8 674 aaKnown RBP12.99□□□□□ -0.33
VPS33A-204ENST00000540669 TBC1D16Q8TBP0 767 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 PI4K2BQ8TCG2 481 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 ZNF622Q969S3 477 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS33A-204ENST00000540669 LNPKQ9C0E8 428 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 POLLQ9UGP5 575 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 AKAP2Q9Y2D5 859 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 AK9Q5TCS8 1911 aa12.99□□□□□ -0.33
VPS33A-204ENST00000540669 MYO5AQ9Y4I1 1855 aaKnown RBP12.98□□□□□ -0.33
VPS33A-204ENST00000540669 TTC41PQ6P2S7 1318 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 NFKBIEO00221 500 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 TAF5LO75529 589 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 KLRK1P26718 216 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 ARID4AP29374 1257 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-204ENST00000540669 ADORA1P30542 326 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 OS9Q13438 667 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-204ENST00000540669 CCDC93Q567U6 631 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 DALRD3Q5D0E6 543 aaKnown RBP12.98□□□□□ -0.33
VPS33A-204ENST00000540669 SOGA3Q5TF21 947 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 HELBQ8NG08 1087 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-204ENST00000540669 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS33A-204ENST00000540669 DBNDD2Q9BQY9 259 aa12.98□□□□□ -0.33
VPS33A-204ENST00000540669 CCDC88AQ3V6T2 1871 aa12.97□□□□□ -0.33
VPS33A-204ENST00000540669 ATP2B4P23634 1241 aa12.97□□□□□ -0.33
VPS33A-204ENST00000540669 PDE1AP54750 535 aa12.97□□□□□ -0.33
VPS33A-204ENST00000540669 FBXO33Q7Z6M2 555 aa12.97□□□□□ -0.33
VPS33A-204ENST00000540669 AACSQ86V21 672 aa12.97□□□□□ -0.33
VPS33A-204ENST00000540669 TXNRD3Q86VQ6 643 aa12.97□□□□□ -0.33
VPS33A-204ENST00000540669 SKAP1Q86WV1 359 aa12.97□□□□□ -0.33
VPS33A-204ENST00000540669 C16orf71Q8IYS4 520 aaPredicted RBP12.97□□□□□ -0.33
VPS33A-204ENST00000540669 MX1P20591 662 aa12.96□□□□□ -0.33
VPS33A-204ENST00000540669 TIMM10P62072 90 aa12.96□□□□□ -0.33
VPS33A-204ENST00000540669 XAGE2Q96GT9 111 aa12.96□□□□□ -0.33
VPS33A-204ENST00000540669 GGA1Q9UJY5 639 aa12.96□□□□□ -0.33
VPS33A-204ENST00000540669 BCS1LQ9Y276 419 aa12.96□□□□□ -0.33
VPS33A-204ENST00000540669 APBB1O00213 710 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 C21orf2O43822 256 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 UFL1O94874 794 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 SLC5A1P13866 664 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 ATP5JP18859 108 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 PRELPP51888 382 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 FKBP4Q02790 459 aaKnown RBP eCLIP12.95□□□□□ -0.34
VPS33A-204ENST00000540669 KIAA2012Q0VF49 1180 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 RTKN2Q8IZC4 609 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 MPNDQ8N594 471 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 FAM84BQ96KN1 310 aaPredicted RBP12.95□□□□□ -0.34
VPS33A-204ENST00000540669 TMX4Q9H1E5 349 aaPredicted RBP12.95□□□□□ -0.34
VPS33A-204ENST00000540669 VPS33BQ9H267 617 aa12.95□□□□□ -0.34
VPS33A-204ENST00000540669 RFX7Q2KHR2 1363 aa12.94□□□□□ -0.34
VPS33A-204ENST00000540669 IFIT1P09914 478 aaKnown RBP12.94□□□□□ -0.34
VPS33A-204ENST00000540669 IL1R1P14778 569 aa12.94□□□□□ -0.34
VPS33A-204ENST00000540669 GSPT1P15170 499 aaKnown RBP12.94□□□□□ -0.34
VPS33A-204ENST00000540669 YBX3P16989 372 aaKnown RBP eCLIP12.94□□□□□ -0.34
VPS33A-204ENST00000540669 PHKA1P46020 1223 aa12.94□□□□□ -0.34
VPS33A-204ENST00000540669 CCDC102BQ68D86 513 aa12.94□□□□□ -0.34
VPS33A-204ENST00000540669 DPP8Q6V1X1 898 aaPredicted RBP12.94□□□□□ -0.34
VPS33A-204ENST00000540669 CCDC8Q9H0W5 538 aaPredicted RBP12.94□□□□□ -0.34
VPS33A-204ENST00000540669 ECHDC1Q9NTX5 307 aa12.94□□□□□ -0.34
VPS33A-204ENST00000540669 NSFL1CQ9UNZ2 370 aaKnown RBP12.94□□□□□ -0.34
VPS33A-204ENST00000540669 SEMA3EO15041 775 aa12.93□□□□□ -0.34
VPS33A-204ENST00000540669 YY1P25490 414 aa12.93□□□□□ -0.34
VPS33A-204ENST00000540669 RASGRF1Q13972 1273 aa12.93□□□□□ -0.34
VPS33A-204ENST00000540669 SCARF1Q14162 830 aa12.93□□□□□ -0.34
VPS33A-204ENST00000540669 TDRD7Q8NHU6 1098 aaKnown RBP12.93□□□□□ -0.34
VPS33A-204ENST00000540669 ANKIB1Q9P2G1 1089 aa12.93□□□□□ -0.34
VPS33A-204ENST00000540669 IFIT2P09913 472 aaKnown RBP12.92□□□□□ -0.34
VPS33A-204ENST00000540669 MCAMP43121 646 aa12.92□□□□□ -0.34
VPS33A-204ENST00000540669 BMP2KLQ5H9B9 411 aa12.92□□□□□ -0.34
VPS33A-204ENST00000540669 TTC22Q5TAA0 569 aa12.92□□□□□ -0.34
VPS33A-204ENST00000540669 GPR101Q96P66 508 aaPredicted RBP12.92□□□□□ -0.34
VPS33A-204ENST00000540669 WWC3Q9ULE0 1092 aa12.92□□□□□ -0.34
VPS33A-204ENST00000540669 FAM205AQ6ZU69 1335 aa12.91□□□□□ -0.34
VPS33A-204ENST00000540669 SALL1Q9NSC2 1324 aa12.91□□□□□ -0.34
VPS33A-204ENST00000540669 GLRX3O76003 335 aaKnown RBP12.91□□□□□ -0.34
VPS33A-204ENST00000540669 GYG1P46976 350 aa12.91□□□□□ -0.34
VPS33A-204ENST00000540669 BCAMP50895 628 aa12.91□□□□□ -0.34
VPS33A-204ENST00000540669 TSHZ3Q63HK5 1081 aa12.91□□□□□ -0.34
VPS33A-204ENST00000540669 SUPT20HQ8NEM7 779 aa12.91□□□□□ -0.34
VPS33A-204ENST00000540669 HAUS7Q99871 368 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms