RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ATP2C2O75185 946 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 TEX13AQ9BXU3 409 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-209ENST00000537178 MYCNP04198 464 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-209ENST00000537178 TRMT1LQ7Z2T5 733 aaKnown RBP12.11□□□□□ -0.47
CLIP1-209ENST00000537178 KCNG4Q8TDN1 519 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 NCOA3Q9Y6Q9 1424 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 TUBB4BP68371 445 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 RRAGBQ5VZM2 374 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 TMTC2Q8N394 836 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 LMBR1Q8WVP7 490 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 NDC80O14777 642 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 PSMA7O14818 248 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 ARL1P40616 181 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-209ENST00000537178 ZBTB16Q05516 673 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 FLIIQ13045 1269 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 ZNF518AQ6AHZ1 1483 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 CLCN1P35523 988 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 ANKS4BQ8N8V4 417 aa12.11□□□□□ -0.47
CLIP1-209ENST00000537178 UQCRFS1P1P0C7P4 283 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 HCLS1P14317 486 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-209ENST00000537178 KIAA1524Q8TCG1 905 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 RRAGDQ9NQL2 400 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-209ENST00000537178 SBNO2Q9Y2G9 1366 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 GNAQP50148 359 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 SKILP12757 684 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 ARFGAP2Q8N6H7 521 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 CRNKL1Q9BZJ0 848 aaKnown RBP12.1□□□□□ -0.47
CLIP1-209ENST00000537178 ANAPC4Q9UJX5 808 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 PHACTR2O75167 634 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 DDIT3P35638 169 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 ISM2Q6H9L7 571 aa12.1□□□□□ -0.47
CLIP1-209ENST00000537178 DDX46Q7L014 1031 aaKnown RBP12.1□□□□□ -0.47
CLIP1-209ENST00000537178 TBC1D9Q6ZT07 1266 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 CCDC144CPQ8IYA2 1237 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 IMPG2Q9BZV3 1241 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 RNF216Q9NWF9 866 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-209ENST00000537178 DNAI1Q9UI46 699 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 FAM200AQ8TCP9 573 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 PAIP2Q9BPZ3 127 aaKnown RBP12.09□□□□□ -0.47
CLIP1-209ENST00000537178 KIF1BO60333 1816 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 ZFYP08048 801 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-209ENST00000537178 STAT6P42226 847 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 HAND2P61296 217 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 WTAPQ15007 396 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 MSL1Q68DK7 614 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 MPRIPQ6WCQ1 1025 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 QRICH2Q9H0J4 1663 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 KRT83P78385 493 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 MCM6Q14566 821 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 LARP6Q9BRS8 491 aaKnown RBP12.09□□□□□ -0.47
CLIP1-209ENST00000537178 CARD14Q9BXL6 1004 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 KRT23Q9C075 422 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 SNRKQ9NRH2 765 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 STX8Q9UNK0 236 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 ANKRD26Q9UPS8 1709 aa12.09□□□□□ -0.47
CLIP1-209ENST00000537178 ZSCAN22P10073 491 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-209ENST00000537178 LRSAM1Q6UWE0 723 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 GTPBP4Q9BZE4 634 aaKnown RBP12.08□□□□□ -0.48
CLIP1-209ENST00000537178 CWC25Q9NXE8 425 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-209ENST00000537178 RSPH14Q9UHP6 348 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 GSTO1P78417 241 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 MAP7D1Q3KQU3 841 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 MRPS27Q92552 414 aaKnown RBP12.08□□□□□ -0.48
CLIP1-209ENST00000537178 PIK3C2BO00750 1634 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 ZBTB43O43298 467 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 KRT86O43790 486 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 TUBBP07437 444 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 PIP4K2BP78356 416 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 BRF1Q92994 677 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 PLCH2O75038 1416 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 POGZQ7Z3K3 1410 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 ADGRB3O60242 1522 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 KLF18A0A0U1RQI7 1052 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 KIF5AQ12840 1032 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 MMRN2Q9H8L6 949 aa12.08□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC160A6NGH7 325 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 MRPS9P82933 396 aaKnown RBP12.07□□□□□ -0.48
CLIP1-209ENST00000537178 ZBTB3Q9H5J0 574 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 LMTK2Q8IWU2 1503 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 POLR3AO14802 1390 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-209ENST00000537178 GPTP24298 496 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 GIMAP6Q6P9H5 292 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC121Q6ZUS5 278 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 ARHGEF28Q8N1W1 1705 aaKnown RBP12.07□□□□□ -0.48
CLIP1-209ENST00000537178 ESR2Q92731 530 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 TRAPPC8Q9Y2L5 1435 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 TRIM27P14373 513 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 MAP3K9P80192 1104 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC129Q6ZRS4 1044 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 CNNM2Q9H8M5 875 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 UGGT1Q9NYU2 1555 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 CTAGE9A4FU28 777 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 EBAG9O00559 213 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 PPP1R42Q7Z4L9 355 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC110Q8TBZ0 833 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 STIM2Q9P246 746 aa12.07□□□□□ -0.48
CLIP1-209ENST00000537178 AFMP43652 599 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 ZNF354CQ86Y25 554 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 OTUD6BQ8N6M0 293 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 ALG1Q9BT22 464 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 261.1 ms