RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 HHIPQ96QV1 700 aa8.49□□□□□ -1.05
PRKDC-208ENST00000536710 RASSF4Q9H2L5 321 aa8.49□□□□□ -1.05
PRKDC-208ENST00000536710 METTL12A8MUP2 240 aa8.48□□□□□ -1.05
PRKDC-208ENST00000536710 PDE2AO00408 941 aaPredicted RBP8.48□□□□□ -1.05
PRKDC-208ENST00000536710 FBXO24O75426 580 aa8.48□□□□□ -1.05
PRKDC-208ENST00000536710 CPB1P15086 417 aa8.48□□□□□ -1.05
PRKDC-208ENST00000536710 FAM35AQ86V20 835 aa8.48□□□□□ -1.05
PRKDC-208ENST00000536710 ZNF654Q8IZM8 581 aa8.48□□□□□ -1.05
PRKDC-208ENST00000536710 SREK1Q8WXA9 508 aaKnown RBP8.48□□□□□ -1.05
PRKDC-208ENST00000536710 SIN3BO75182 1162 aa8.47□□□□□ -1.05
PRKDC-208ENST00000536710 GRIA4P48058 902 aa8.47□□□□□ -1.05
PRKDC-208ENST00000536710 PTPN12Q05209 780 aaKnown RBP8.47□□□□□ -1.05
PRKDC-208ENST00000536710 GNL2Q13823 731 aaKnown RBP8.47□□□□□ -1.05
PRKDC-208ENST00000536710 SPRED3Q2MJR0 410 aa8.47□□□□□ -1.05
PRKDC-208ENST00000536710 CEP135Q66GS9 1140 aa8.47□□□□□ -1.05
PRKDC-208ENST00000536710 TPTE2Q6XPS3 522 aa8.47□□□□□ -1.05
PRKDC-208ENST00000536710 TMEM102Q8N9M5 508 aaPredicted RBP8.47□□□□□ -1.05
PRKDC-208ENST00000536710 PBX4Q9BYU1 374 aa8.47□□□□□ -1.05
PRKDC-208ENST00000536710 DDX41Q9UJV9 622 aaKnown RBP8.47□□□□□ -1.05
PRKDC-208ENST00000536710 NSFL1CQ9UNZ2 370 aaKnown RBP8.47□□□□□ -1.05
PRKDC-208ENST00000536710 INPP5FQ9Y2H2 1132 aa8.47□□□□□ -1.05
PRKDC-208ENST00000536710 A0A096LPE4 126 aa8.46□□□□□ -1.06
PRKDC-208ENST00000536710 A0A1W2PPZ6 126 aa8.46□□□□□ -1.06
PRKDC-208ENST00000536710 SMNDC1O75940 238 aaKnown RBP eCLIP8.46□□□□□ -1.06
PRKDC-208ENST00000536710 TNNI2P48788 182 aa8.46□□□□□ -1.06
PRKDC-208ENST00000536710 NXPE3Q969Y0 559 aa8.46□□□□□ -1.06
PRKDC-208ENST00000536710 DRC1Q96MC2 740 aa8.46□□□□□ -1.06
PRKDC-208ENST00000536710 ZFYVE1Q9HBF4 777 aa8.46□□□□□ -1.06
PRKDC-208ENST00000536710 NXF1Q9UBU9 619 aaKnown RBP8.46□□□□□ -1.06
PRKDC-208ENST00000536710 PPM1HQ9ULR3 514 aa8.46□□□□□ -1.06
PRKDC-208ENST00000536710 F6X3S4 739 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 NFKBIEO00221 500 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 LCE2BO14633 110 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 ADH6P28332 368 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 RACK1P63244 317 aaKnown RBP8.45□□□□□ -1.06
PRKDC-208ENST00000536710 SF3A1Q15459 793 aaKnown RBP8.45□□□□□ -1.06
PRKDC-208ENST00000536710 MAP3K11Q16584 847 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 ELMSAN1Q6PJG2 1045 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 NOC4LQ9BVI4 516 aaKnown RBP8.45□□□□□ -1.06
PRKDC-208ENST00000536710 BHLHE41Q9C0J9 482 aaPredicted RBP8.45□□□□□ -1.06
PRKDC-208ENST00000536710 COPRSQ9NQ92 184 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 AVENQ9NQS1 362 aaPredicted RBP8.45□□□□□ -1.06
PRKDC-208ENST00000536710 SLC6A14Q9UN76 642 aa8.45□□□□□ -1.06
PRKDC-208ENST00000536710 NEURL1BA8MQ27 555 aa8.44□□□□□ -1.06
PRKDC-208ENST00000536710 ADH7P40394 386 aa8.44□□□□□ -1.06
PRKDC-208ENST00000536710 RELL1Q8IUW5 271 aa8.44□□□□□ -1.06
PRKDC-208ENST00000536710 PLD4Q96BZ4 506 aa8.44□□□□□ -1.06
PRKDC-208ENST00000536710 POP1Q99575 1024 aaKnown RBP8.44□□□□□ -1.06
PRKDC-208ENST00000536710 TRIM56Q9BRZ2 755 aaKnown RBP8.44□□□□□ -1.06
PRKDC-208ENST00000536710 CEP44Q9C0F1 390 aa8.44□□□□□ -1.06
PRKDC-208ENST00000536710 KBTBD4Q9NVX7 518 aa8.44□□□□□ -1.06
PRKDC-208ENST00000536710 GPN3Q9UHW5 284 aaPredicted RBP8.44□□□□□ -1.06
PRKDC-208ENST00000536710 FAM177BA6PVY3 158 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 ARAFP10398 606 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 MAP2K3P46734 347 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 GAS6Q14393 721 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 ERMP1Q7Z2K6 904 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 TNFRSF25Q93038 417 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 TINF2Q9BSI4 451 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 SMG9Q9H0W8 520 aaKnown RBP8.43□□□□□ -1.06
PRKDC-208ENST00000536710 SRA1Q9HD15 236 aaKnown RBP8.43□□□□□ -1.06
PRKDC-208ENST00000536710 MBIPQ9NS73 344 aa8.43□□□□□ -1.06
PRKDC-208ENST00000536710 MINDY4BA8MYZ0 360 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 ITPKAP23677 461 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 GBP2P32456 591 aaPredicted RBP8.42□□□□□ -1.06
PRKDC-208ENST00000536710 PWP1Q13610 501 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 PERM1Q5SV97 790 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 SV2BQ7L1I2 683 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 TANGO6Q9C0B7 1094 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 LACRTQ9GZZ8 138 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 KLF15Q9UIH9 416 aa8.42□□□□□ -1.06
PRKDC-208ENST00000536710 CELA3AP09093 270 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 PTPRAP18433 802 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 DNAJA1P31689 397 aaKnown RBP8.41□□□□□ -1.06
PRKDC-208ENST00000536710 ZNF157P51786 506 aaPredicted RBP8.41□□□□□ -1.06
PRKDC-208ENST00000536710 GPR161Q8N6U8 529 aaKnown RBP8.41□□□□□ -1.06
PRKDC-208ENST00000536710 BSNDQ8WZ55 320 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 RSRP1Q9BUV0 290 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 MUC3BQ9H195 1237 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 ZNF576Q9H609 170 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 GGA1Q9UJY5 639 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 NAGPAQ9UK23 515 aa8.41□□□□□ -1.06
PRKDC-208ENST00000536710 RLBP1P12271 317 aa8.4□□□□□ -1.06
PRKDC-208ENST00000536710 ALAS2P22557 587 aa8.4□□□□□ -1.06
PRKDC-208ENST00000536710 GDF6Q6KF10 455 aaPredicted RBP8.4□□□□□ -1.06
PRKDC-208ENST00000536710 PSAPL1Q6NUJ1 521 aa8.4□□□□□ -1.06
PRKDC-208ENST00000536710 FCHSD1Q86WN1 690 aa8.4□□□□□ -1.06
PRKDC-208ENST00000536710 SEC31BQ9NQW1 1179 aa8.4□□□□□ -1.06
PRKDC-208ENST00000536710 TRIM33Q9UPN9 1127 aa8.4□□□□□ -1.06
PRKDC-208ENST00000536710 IGF1RP08069 1367 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 ADARB2-AS1A8MUL3 147 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 H3BM21 787 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 PAK2Q13177 524 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 VPS37DQ86XT2 251 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 ANKRD24Q8TF21 1146 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 NUDT8Q8WV74 236 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 TMEM74Q96NL1 305 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 SPON2Q9BUD6 331 aa8.39□□□□□ -1.07
PRKDC-208ENST00000536710 COL25A1Q9BXS0 654 aaPredicted RBP8.39□□□□□ -1.07
PRKDC-208ENST00000536710 CLEC4MQ9H2X3 399 aaPredicted RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms