RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 EPHX2P34913 555 aa24.77■■□□□ 1.56
CPSF1-209ENST00000532725 GMPSP49915 693 aaPredicted RBP24.77■■□□□ 1.56
CPSF1-209ENST00000532725 METTL24Q5JXM2 366 aa24.77■■□□□ 1.56
CPSF1-209ENST00000532725 PA2G4Q9UQ80 394 aaKnown RBP24.77■■□□□ 1.56
CPSF1-209ENST00000532725 CIAO1O76071 339 aa24.76■■□□□ 1.55
CPSF1-209ENST00000532725 PDE8BO95263 885 aa24.76■■□□□ 1.55
CPSF1-209ENST00000532725 GPRC5DQ9NZD1 345 aa24.76■■□□□ 1.55
CPSF1-209ENST00000532725 ZBTB12Q9Y330 459 aaPredicted RBP24.76■■□□□ 1.55
CPSF1-209ENST00000532725 SCN4AP35499 1836 aa24.75■■□□□ 1.55
CPSF1-209ENST00000532725 LMOD1P29536 600 aaPredicted RBP24.75■■□□□ 1.55
CPSF1-209ENST00000532725 ATP8B2P98198 1209 aa24.75■■□□□ 1.55
CPSF1-209ENST00000532725 PDE3AQ14432 1141 aa24.75■■□□□ 1.55
CPSF1-209ENST00000532725 MVPQ14764 893 aaKnown RBP24.75■■□□□ 1.55
CPSF1-209ENST00000532725 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.75■■□□□ 1.55
CPSF1-209ENST00000532725 DPF2Q92785 391 aa24.75■■□□□ 1.55
CPSF1-209ENST00000532725 SIL1Q9H173 461 aa24.75■■□□□ 1.55
CPSF1-209ENST00000532725 CD209Q9NNX6 404 aa24.75■■□□□ 1.55
CPSF1-209ENST00000532725 COG6Q9Y2V7 657 aa24.75■■□□□ 1.55
CPSF1-209ENST00000532725 PNMA6EA0A0J9YXQ4 647 aa24.74■■□□□ 1.55
CPSF1-209ENST00000532725 POTEIP0CG38 1075 aa24.74■■□□□ 1.55
CPSF1-209ENST00000532725 POTEJP0CG39 1038 aa24.74■■□□□ 1.55
CPSF1-209ENST00000532725 C20orf194Q5TEA3 1177 aa24.74■■□□□ 1.55
CPSF1-209ENST00000532725 C1orf115Q9H7X2 142 aa24.74■■□□□ 1.55
CPSF1-209ENST00000532725 SCN9AQ15858 1988 aa24.74■■□□□ 1.55
CPSF1-209ENST00000532725 USP17L3A6NCW0 530 aa24.73■■□□□ 1.55
CPSF1-209ENST00000532725 USP17L4A6NCW7 530 aa24.73■■□□□ 1.55
CPSF1-209ENST00000532725 USP17L1Q7RTZ2 530 aa24.73■■□□□ 1.55
CPSF1-209ENST00000532725 CNOT7Q9UIV1 285 aaKnown RBP24.73■■□□□ 1.55
CPSF1-209ENST00000532725 FGFR2P21802 821 aa24.72■■□□□ 1.55
CPSF1-209ENST00000532725 RPS12P25398 132 aaKnown RBP24.72■■□□□ 1.55
CPSF1-209ENST00000532725 IL15P40933 162 aaPredicted RBP24.72■■□□□ 1.55
CPSF1-209ENST00000532725 FSTL1Q12841 308 aa24.72■■□□□ 1.55
CPSF1-209ENST00000532725 PNMA8AQ86V59 439 aaPredicted RBP24.72■■□□□ 1.55
CPSF1-209ENST00000532725 FAM84BQ96KN1 310 aaPredicted RBP24.72■■□□□ 1.55
CPSF1-209ENST00000532725 A0A1B0GUL6 1792 aa24.72■■□□□ 1.55
CPSF1-209ENST00000532725 IL1R1P14778 569 aa24.71■■□□□ 1.55
CPSF1-209ENST00000532725 POLA2Q14181 598 aa24.71■■□□□ 1.55
CPSF1-209ENST00000532725 RSBN1LQ6PCB5 846 aaPredicted RBP24.71■■□□□ 1.55
CPSF1-209ENST00000532725 ZNF804AQ7Z570 1209 aa24.71■■□□□ 1.55
CPSF1-209ENST00000532725 SMC1BQ8NDV3 1235 aa24.71■■□□□ 1.55
CPSF1-209ENST00000532725 SSH3Q8TE77 659 aa24.71■■□□□ 1.55
CPSF1-209ENST00000532725 DDX19BQ9UMR2 479 aa24.71■■□□□ 1.55
CPSF1-209ENST00000532725 SHTN1A0MZ66 631 aa24.7■■□□□ 1.54
CPSF1-209ENST00000532725 DACT2Q5SW24 774 aa24.7■■□□□ 1.54
CPSF1-209ENST00000532725 STRIP1Q5VSL9 837 aa24.7■■□□□ 1.54
CPSF1-209ENST00000532725 TTLL5Q6EMB2 1281 aa24.7■■□□□ 1.54
CPSF1-209ENST00000532725 GMLQ99445 158 aa24.7■■□□□ 1.54
CPSF1-209ENST00000532725 ADARB2Q9NS39 739 aaKnown RBP24.7■■□□□ 1.54
CPSF1-209ENST00000532725 ZBTB40Q9NUA8 1239 aa24.7■■□□□ 1.54
CPSF1-209ENST00000532725 CEP126Q9P2H0 1117 aa24.7■■□□□ 1.54
CPSF1-209ENST00000532725 HIBADHP31937 336 aaKnown RBP24.69■■□□□ 1.54
CPSF1-209ENST00000532725 GYG1P46976 350 aa24.69■■□□□ 1.54
CPSF1-209ENST00000532725 PUM3Q15397 648 aaKnown RBP24.69■■□□□ 1.54
CPSF1-209ENST00000532725 EAPPQ56P03 285 aaPredicted RBP24.69■■□□□ 1.54
CPSF1-209ENST00000532725 USP50Q70EL3 339 aaPredicted RBP24.69■■□□□ 1.54
CPSF1-209ENST00000532725 FBXO33Q7Z6M2 555 aa24.69■■□□□ 1.54
CPSF1-209ENST00000532725 LDHDQ86WU2 507 aa24.69■■□□□ 1.54
CPSF1-209ENST00000532725 AGBL3Q8NEM8 1001 aa24.69■■□□□ 1.54
CPSF1-209ENST00000532725 H7C1D1 291 aa24.68■■□□□ 1.54
CPSF1-209ENST00000532725 CHADLQ6NUI6 762 aa24.68■■□□□ 1.54
CPSF1-209ENST00000532725 MICALL2Q8IY33 904 aa24.68■■□□□ 1.54
CPSF1-209ENST00000532725 GTF2IP78347 998 aa24.67■■□□□ 1.54
CPSF1-209ENST00000532725 CEP85Q6P2H3 762 aa24.67■■□□□ 1.54
CPSF1-209ENST00000532725 TDRD7Q8NHU6 1098 aaKnown RBP24.67■■□□□ 1.54
CPSF1-209ENST00000532725 LPIN2Q92539 896 aa24.67■■□□□ 1.54
CPSF1-209ENST00000532725 MXD3Q9BW11 206 aa24.67■■□□□ 1.54
CPSF1-209ENST00000532725 SASH1O94885 1247 aa24.66■■□□□ 1.54
CPSF1-209ENST00000532725 HIRAP54198 1017 aaPredicted RBP24.66■■□□□ 1.54
CPSF1-209ENST00000532725 CLEC11AQ9Y240 323 aa24.66■■□□□ 1.54
CPSF1-209ENST00000532725 ZNF609O15014 1411 aa24.66■■□□□ 1.54
CPSF1-209ENST00000532725 IFIT1P09914 478 aaKnown RBP24.65■■□□□ 1.54
CPSF1-209ENST00000532725 CHMP4BQ9H444 224 aaKnown RBP24.65■■□□□ 1.54
CPSF1-209ENST00000532725 BCAMP50895 628 aa24.64■■□□□ 1.54
CPSF1-209ENST00000532725 ZNF280AP59817 542 aaPredicted RBP24.64■■□□□ 1.54
CPSF1-209ENST00000532725 G3BP1Q13283 466 aaKnown RBP eCLIP24.64■■□□□ 1.54
CPSF1-209ENST00000532725 CAVIN4Q5BKX8 364 aa24.64■■□□□ 1.54
CPSF1-209ENST00000532725 SAMD7Q7Z3H4 446 aa24.64■■□□□ 1.54
CPSF1-209ENST00000532725 FBXW7Q969H0 707 aa24.64■■□□□ 1.54
CPSF1-209ENST00000532725 PSME4Q14997 1843 aa24.63■■□□□ 1.53
CPSF1-209ENST00000532725 USP17L8P0C7I0 530 aa24.63■■□□□ 1.53
CPSF1-209ENST00000532725 SLC5A1P13866 664 aa24.63■■□□□ 1.53
CPSF1-209ENST00000532725 RRP1P56182 461 aaKnown RBP24.63■■□□□ 1.53
CPSF1-209ENST00000532725 TFCP2Q12800 502 aa24.63■■□□□ 1.53
CPSF1-209ENST00000532725 ATP2B3Q16720 1220 aa24.63■■□□□ 1.53
CPSF1-209ENST00000532725 TRPM4Q8TD43 1214 aa24.63■■□□□ 1.53
CPSF1-209ENST00000532725 PGAP2Q9UHJ9 254 aa24.63■■□□□ 1.53
CPSF1-209ENST00000532725 NOP58Q9Y2X3 529 aaKnown RBP24.63■■□□□ 1.53
CPSF1-209ENST00000532725 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.63■■□□□ 1.53
CPSF1-209ENST00000532725 MYO3BQ8WXR4 1341 aa24.62■■□□□ 1.53
CPSF1-209ENST00000532725 EGFRP00533 1210 aa24.62■■□□□ 1.53
CPSF1-209ENST00000532725 HSPA6P17066 643 aa24.62■■□□□ 1.53
CPSF1-209ENST00000532725 VPS37DQ86XT2 251 aa24.62■■□□□ 1.53
CPSF1-209ENST00000532725 FAM205AQ6ZU69 1335 aa24.61■■□□□ 1.53
CPSF1-209ENST00000532725 ITGBL1O95965 494 aaPredicted RBP24.61■■□□□ 1.53
CPSF1-209ENST00000532725 TIMM10P62072 90 aa24.61■■□□□ 1.53
CPSF1-209ENST00000532725 RPAP2Q8IXW5 612 aaPredicted RBP24.61■■□□□ 1.53
CPSF1-209ENST00000532725 CNTROBQ8N137 903 aa24.61■■□□□ 1.53
CPSF1-209ENST00000532725 CERS5Q8N5B7 392 aa24.61■■□□□ 1.53
CPSF1-209ENST00000532725 ZC3H15Q8WU90 426 aaKnown RBP24.61■■□□□ 1.53
CPSF1-209ENST00000532725 ADAMTSL1Q8N6G6 1762 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms