RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 B4GALNT3Q6L9W6 998 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 PHLDB3Q6NSJ2 640 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 PMEPA1Q969W9 287 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 LACRTQ9GZZ8 138 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 GGNBP2Q9H3C7 697 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 CNTN3Q9P232 1028 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 KANSL3Q9P2N6 904 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 CES1P23141 567 aa7.4□□□□□ -1.22
CD44-235ENST00000532339 ZMYM1Q5SVZ6 1142 aa7.4□□□□□ -1.22
CD44-235ENST00000532339 TMEM130Q8N3G9 435 aa7.4□□□□□ -1.22
CD44-235ENST00000532339 C1orf127Q8N9H9 656 aa7.4□□□□□ -1.22
CD44-235ENST00000532339 AKTIPQ9H8T0 292 aa7.4□□□□□ -1.22
CD44-235ENST00000532339 SALL4Q9UJQ4 1053 aa7.4□□□□□ -1.22
CD44-235ENST00000532339 POLIQ9UNA4 740 aa7.4□□□□□ -1.22
CD44-235ENST00000532339 CARNS1A5YM72 827 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 LINC01387J3KSC0 135 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 PTPRAP18433 802 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 USP5P45974 858 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 FKBP4Q02790 459 aaKnown RBP eCLIP7.39□□□□□ -1.23
CD44-235ENST00000532339 EHHADHQ08426 723 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 PRSS36Q5K4E3 855 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 FAM117BQ6P1L5 589 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 Q8N3U1 123 aa7.39□□□□□ -1.23
CD44-235ENST00000532339 A6NHS1 94 aa7.38□□□□□ -1.23
CD44-235ENST00000532339 F8W735 103 aaPredicted RBP7.38□□□□□ -1.23
CD44-235ENST00000532339 ABL1P00519 1130 aa7.38□□□□□ -1.23
CD44-235ENST00000532339 XP32Q5T750 250 aa7.37□□□□□ -1.23
CD44-235ENST00000532339 KLHL23Q8NBE8 558 aa7.37□□□□□ -1.23
CD44-235ENST00000532339 MEGF10Q96KG7 1140 aa7.37□□□□□ -1.23
CD44-235ENST00000532339 POP1Q99575 1024 aaKnown RBP7.37□□□□□ -1.23
CD44-235ENST00000532339 ADAM19Q9H013 955 aa7.37□□□□□ -1.23
CD44-235ENST00000532339 SMARCA2P51531 1590 aa7.37□□□□□ -1.23
CD44-235ENST00000532339 ALX3O95076 343 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 CDC25BP30305 580 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 CD68P34810 354 aaPredicted RBP7.36□□□□□ -1.23
CD44-235ENST00000532339 CABP4P57796 275 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 TXNDC11Q6PKC3 985 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 DZIP1LQ8IYY4 767 aaKnown RBP7.36□□□□□ -1.23
CD44-235ENST00000532339 GALNT11Q8NCW6 608 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 SNX29Q8TEQ0 813 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 CHRDQ9H2X0 955 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 EGFL7Q9UHF1 273 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 NCAPD3P42695 1498 aa7.36□□□□□ -1.23
CD44-235ENST00000532339 FSCN2O14926 492 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 FZD6O60353 706 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 PHACTR2O75167 634 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 TNFRSF21O75509 655 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 EPHA1P21709 976 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 ZNF211Q13398 564 aaPredicted RBP7.35□□□□□ -1.23
CD44-235ENST00000532339 ADAMTSL4Q6UY14 1074 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.35□□□□□ -1.23
CD44-235ENST00000532339 ANO2Q9NQ90 1003 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 SH2B1Q9NRF2 756 aaPredicted RBP7.35□□□□□ -1.23
CD44-235ENST00000532339 DZANK1Q9NVP4 752 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.35□□□□□ -1.23
CD44-235ENST00000532339 LMTK3Q96Q04 1460 aa7.35□□□□□ -1.23
CD44-235ENST00000532339 H3BRJ5 948 aa7.34□□□□□ -1.23
CD44-235ENST00000532339 NFKBIEO00221 500 aa7.34□□□□□ -1.23
CD44-235ENST00000532339 PDE2AO00408 941 aaPredicted RBP7.34□□□□□ -1.23
CD44-235ENST00000532339 EDN3P14138 238 aa7.34□□□□□ -1.23
CD44-235ENST00000532339 ACPPP15309 386 aa7.34□□□□□ -1.23
CD44-235ENST00000532339 Q6ZS46 218 aa7.34□□□□□ -1.23
CD44-235ENST00000532339 WNT8BQ93098 351 aa7.34□□□□□ -1.23
CD44-235ENST00000532339 CARD10Q9BWT7 1032 aa7.34□□□□□ -1.23
CD44-235ENST00000532339 EREGO14944 169 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 GLB1P16278 677 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 PIP4K2BP78356 416 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 FOXD4L6Q3SYB3 417 aaPredicted RBP7.33□□□□□ -1.24
CD44-235ENST00000532339 FOXD4L3Q6VB84 417 aaPredicted RBP7.33□□□□□ -1.24
CD44-235ENST00000532339 PRR23CQ6ZRP0 262 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 ACAD11Q709F0 780 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 GJD3Q8N144 294 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 AGGF1Q8N302 714 aaeCLIP7.33□□□□□ -1.24
CD44-235ENST00000532339 TMEM102Q8N9M5 508 aaPredicted RBP7.33□□□□□ -1.24
CD44-235ENST00000532339 ARID3AQ99856 593 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 SEC31BQ9NQW1 1179 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 CCDC87Q9NVE4 849 aa7.33□□□□□ -1.24
CD44-235ENST00000532339 SCO2A0A1W2PP80 73 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 TM4SF5O14894 197 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 ICMTO60725 284 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 PDE4CQ08493 712 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 OSMRQ99650 979 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 CEP41Q9BYV8 373 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 OSGEPQ9NPF4 335 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 KCNK4Q9NYG8 393 aa7.32□□□□□ -1.24
CD44-235ENST00000532339 FOXD3Q9UJU5 478 aaPredicted RBP7.32□□□□□ -1.24
CD44-235ENST00000532339 WISP1O95388 367 aa7.31□□□□□ -1.24
CD44-235ENST00000532339 DUOXA2Q1HG44 320 aa7.31□□□□□ -1.24
CD44-235ENST00000532339 GLYCTKQ8IVS8 523 aa7.31□□□□□ -1.24
CD44-235ENST00000532339 ZKSCAN3Q9BRR0 538 aa7.31□□□□□ -1.24
CD44-235ENST00000532339 AMOTL2Q9Y2J4 779 aa7.31□□□□□ -1.24
CD44-235ENST00000532339 H3BRB1 525 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 SUPT5HO00267 1087 aaKnown RBP7.3□□□□□ -1.24
CD44-235ENST00000532339 TRPA1O75762 1119 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 ARL4DP49703 201 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 FBXO41Q8TF61 875 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 BSNDQ8WZ55 320 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 NXPE3Q969Y0 559 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 KLHDC7BQ96G42 594 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 HHIPQ96QV1 700 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms