RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SF3A1Q15459 793 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 RABL6Q3YEC7 729 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 LRP10Q7Z4F1 713 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 IFNL2Q8IZJ0 200 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 ADGRL3Q9HAR2 1447 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 SMTNL1A8MU46 457 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 BIN1O00499 593 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 PDIA3P30101 505 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 HSP90AB3PQ58FF7 597 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 SYTL4Q96C24 671 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 JCADQ9P266 1359 aa10.83□□□□□ -0.67
LIMCH1-215ENST00000512632 CCDC69A6NI79 296 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 IFIT1P09914 478 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 CEP135Q66GS9 1140 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 NAA16Q6N069 864 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 TTLL7Q6ZT98 887 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 LLPHQ9BRT6 129 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 ZBTB3Q9H5J0 574 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 NPHP1O15259 732 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 CYP27B1O15528 508 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 ZNF396Q96N95 335 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 ZNF330Q9Y3S2 320 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 HMGB1P09429 215 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 CABP4P57796 275 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 EXOSC10Q01780 885 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 ISM2Q6H9L7 571 aa10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 PUS3Q9BZE2 481 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-215ENST00000512632 WASHC4Q2M389 1173 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 ANO10Q9NW15 660 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 PCDHA7Q9UN72 937 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 CTAGE5O15320 804 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 FAM160A1Q05DH4 1040 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 ATG9AQ7Z3C6 839 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 ILDR1Q86SU0 546 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 ENGASEQ8NFI3 743 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 PTPN14Q15678 1187 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 CAVIN2O95810 425 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 A1BGP04217 495 aa10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 PROSER2Q86WR7 435 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 KDM6AO15550 1401 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-215ENST00000512632 MAST3O60307 1309 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 FDPSP14324 419 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 CASP7P55210 303 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 FOXO4P98177 505 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 STK38Q15208 465 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 ZRSR1Q15695 479 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 ZMYM1Q5SVZ6 1142 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 GORABQ5T7V8 394 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 CEP57L1Q8IYX8 460 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 A0A1B0GUL7 405 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 DHX40Q8IX18 779 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 OSBP2Q969R2 916 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 MRFAP1L1Q96HT8 127 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 CLIC4Q9Y696 253 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 NBPF26B4DH59 902 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 NDUFA8P51970 172 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 DMTNQ08495 405 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 NBPF14Q5TI25 921 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 NBPF10Q6P3W6 841 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 NBPF15Q8N660 670 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 PLBD2Q8NHP8 589 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 DSCC1Q9BVC3 393 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 HELLSQ9NRZ9 838 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 PAXBP1Q9Y5B6 917 aa10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 ZNF215Q9UL58 517 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-215ENST00000512632 M0R2C6 588 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 SARM1Q6SZW1 724 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 MRPS27Q92552 414 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 SH3TC1Q8TE82 1336 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 RNF113AO15541 343 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 SMC2O95347 1197 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 DPCR1Q3MIW9 517 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 KIF13AQ9H1H9 1805 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 DCAF5Q96JK2 942 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 C8orf76Q96K31 380 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 H7C1W4 665 aa10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 ORC3Q9UBD5 711 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-215ENST00000512632 KLF18A0A0U1RQI7 1052 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 IL15P40933 162 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 FMR1NBQ8N0W7 255 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 CWC25Q9NXE8 425 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 CARMIL3Q8ND23 1372 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 EYA2O00167 538 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 CDC25BP30305 580 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 ADORA1P30542 326 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 CCZ1BP86790 482 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 CCZ1P86791 482 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 ZNF274Q96GC6 653 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 CEP126Q9P2H0 1117 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 CPLX1O14810 134 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 PI16Q6UXB8 463 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 IFNKQ9P0W0 207 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 LMO7Q8WWI1 1683 aa10.79□□□□□ -0.68
LIMCH1-215ENST00000512632 MARCKSP29966 332 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 AGXT2Q9BYV1 514 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 GOLGA8BA8MQT2 603 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 ADALQ6DHV7 355 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 TMC6Q7Z403 805 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 LINC00301Q8NCQ3 95 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 NAT10Q9H0A0 1025 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms