RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 THSD7BQ9C0I4 1608 aa14.27□□□□□ -0.12
LIMCH1-214ENST00000512228 IRS2Q9Y4H2 1338 aa14.27□□□□□ -0.12
LIMCH1-214ENST00000512228 TAF5LO75529 589 aa14.27□□□□□ -0.13
LIMCH1-214ENST00000512228 DACT2Q5SW24 774 aa14.27□□□□□ -0.13
LIMCH1-214ENST00000512228 KAZALD1Q96I82 304 aa14.27□□□□□ -0.13
LIMCH1-214ENST00000512228 ZNF594Q96JF6 807 aaPredicted RBP14.27□□□□□ -0.13
LIMCH1-214ENST00000512228 USP17L3A6NCW0 530 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 USP17L4A6NCW7 530 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 FAM155AB1AL88 458 aaPredicted RBP14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 CHRNDQ07001 517 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 PRAMEF18Q5VWM3 479 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 USP17L1Q7RTZ2 530 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 PODNQ7Z5L7 613 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 AGBL3Q8NEM8 1001 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 GGA3Q9NZ52 723 aa14.26□□□□□ -0.13
LIMCH1-214ENST00000512228 ZNF804BA4D1E1 1349 aa14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 USP17L8P0C7I0 530 aa14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 ECE1P42892 770 aa14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 MAP2K1Q02750 393 aaPredicted RBP14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 NBPF9Q3BBW0 867 aa14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 ANGEL2Q5VTE6 544 aaKnown RBP14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 AIDAQ96BJ3 306 aa14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 DCPSQ96C86 337 aaKnown RBP14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 CASP8AP2Q9UKL3 1982 aa14.25□□□□□ -0.13
LIMCH1-214ENST00000512228 A0A1B0GUL6 1792 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 MED23Q9ULK4 1368 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 MAP2K2P36507 400 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 IGHMBP2P38935 993 aaKnown RBP14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 HUNKP57058 714 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 LMBR1LQ6UX01 489 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 MOB2Q70IA6 237 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 CDCA7LQ96GN5 454 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 HHIPL1Q96JK4 782 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 MYH16Q9H6N6 1097 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 MYOZ2Q9NPC6 264 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 LEMD3Q9Y2U8 911 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 ZNF609O15014 1411 aa14.24□□□□□ -0.13
LIMCH1-214ENST00000512228 NBPF7P0C2Y1 421 aaPredicted RBP14.23□□□□□ -0.13
LIMCH1-214ENST00000512228 CDCA5Q96FF9 252 aa14.23□□□□□ -0.13
LIMCH1-214ENST00000512228 GBA2Q9HCG7 927 aaPredicted RBP14.23□□□□□ -0.13
LIMCH1-214ENST00000512228 PCDHAC2Q9Y5I4 1007 aa14.23□□□□□ -0.13
LIMCH1-214ENST00000512228 ANKRD18BA2A2Z9 1011 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 GRM8O00222 908 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 GTF2IP78347 998 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 TTLL5Q6EMB2 1281 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 SLC4A10Q6U841 1118 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 CERS5Q8N5B7 392 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 MRPL50Q8N5N7 158 aaKnown RBP14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 FBXW7Q969H0 707 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 MPHOSPH8Q99549 860 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 PUS3Q9BZE2 481 aaKnown RBP14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 COA1Q9GZY4 146 aa14.22□□□□□ -0.13
LIMCH1-214ENST00000512228 WNT10BO00744 389 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 IFIT5Q13325 482 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 STRIP1Q5VSL9 837 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 RGMBQ6NW40 437 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 SULF1Q8IWU6 871 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 SUCLG2Q96I99 432 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 ANKRD2Q9GZV1 360 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 CD209Q9NNX6 404 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 CHMP3Q9Y3E7 222 aa14.21□□□□□ -0.13
LIMCH1-214ENST00000512228 AOX1Q06278 1338 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 PLIN1O60240 522 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 SASH1O94885 1247 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 KIF23Q02241 960 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 SLFN5Q08AF3 891 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 KIAA0825Q8IV33 1275 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 C2orf69Q8N8R5 385 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 SSH1Q8WYL5 1049 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 JAG2Q9Y219 1238 aa14.2□□□□□ -0.14
LIMCH1-214ENST00000512228 ZBED3Q96IU2 234 aaPredicted RBP14.19□□□□□ -0.14
LIMCH1-214ENST00000512228 C9orf78Q9NZ63 289 aaPredicted RBP14.19□□□□□ -0.14
LIMCH1-214ENST00000512228 UBE2Q2LH0YL09 131 aa14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 ALDH1L1O75891 902 aa14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 ZNF157P51786 506 aaPredicted RBP14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 BRPF1P55201 1214 aaPredicted RBP14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 C15orf52Q6ZUT6 534 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 CSRNP1Q96S65 589 aa14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 SRCIN1Q9C0H9 1055 aa14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 FZD1Q9UP38 647 aa14.18□□□□□ -0.14
LIMCH1-214ENST00000512228 UTYO14607 1347 aa14.17□□□□□ -0.14
LIMCH1-214ENST00000512228 LDHAL6AQ6ZMR3 332 aa14.17□□□□□ -0.14
LIMCH1-214ENST00000512228 TRMT2AQ8IZ69 625 aaKnown RBP14.17□□□□□ -0.14
LIMCH1-214ENST00000512228 ANKRD44Q8N8A2 993 aa14.17□□□□□ -0.14
LIMCH1-214ENST00000512228 RIPOR2Q9Y4F9 1068 aa14.17□□□□□ -0.14
LIMCH1-214ENST00000512228 IL1R1P14778 569 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 KCNJ4P48050 445 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 NOGQ13253 232 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 CCDC57Q2TAC2 916 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 KLHDC4Q8TBB5 520 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 ABHD8Q96I13 439 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 BEGAINQ9BUH8 593 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 USP44Q9H0E7 712 aa14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 BICC1Q9H694 974 aaKnown RBP14.16□□□□□ -0.14
LIMCH1-214ENST00000512228 PITPNM2Q9BZ72 1349 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 F8W031 263 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 SLC10A3P09131 477 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 GYG1P46976 350 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 GRIK5Q16478 980 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 LRRC24Q50LG9 513 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms