RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 CAVIN4Q5BKX8 364 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 CIAPIN1Q6FI81 312 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 CEP85Q6P2H3 762 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 CHRDL2Q6WN34 429 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 VPS37DQ86XT2 251 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 SSH3Q8TE77 659 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 SIL1Q9H173 461 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 AKAP2Q9Y2D5 859 aa11.32□□□□□ -0.6
NUP54-207ENST00000508583 TAF5LO75529 589 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 LMOD1P29536 600 aaPredicted RBP11.31□□□□□ -0.6
NUP54-207ENST00000508583 POLA2Q14181 598 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 LRRC24Q50LG9 513 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 C20orf194Q5TEA3 1177 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 ERC1Q8IUD2 1116 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 KLHDC4Q8TBB5 520 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 LPIN2Q92539 896 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 L3MBTL3Q96JM7 780 aaPredicted RBP11.31□□□□□ -0.6
NUP54-207ENST00000508583 PUS3Q9BZE2 481 aaKnown RBP11.31□□□□□ -0.6
NUP54-207ENST00000508583 C1orf115Q9H7X2 142 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 DBNDD1Q9H9R9 158 aa11.31□□□□□ -0.6
NUP54-207ENST00000508583 PNMA6EA0A0J9YXQ4 647 aa11.3□□□□□ -0.6
NUP54-207ENST00000508583 VEGFAP15692 232 aaPredicted RBP11.3□□□□□ -0.6
NUP54-207ENST00000508583 KCNA4P22459 653 aa11.3□□□□□ -0.6
NUP54-207ENST00000508583 RPS12P25398 132 aaKnown RBP11.3□□□□□ -0.6
NUP54-207ENST00000508583 MMP14P50281 582 aa11.3□□□□□ -0.6
NUP54-207ENST00000508583 C16orf71Q8IYS4 520 aaPredicted RBP11.3□□□□□ -0.6
NUP54-207ENST00000508583 VGLL2Q8N8G2 317 aa11.3□□□□□ -0.6
NUP54-207ENST00000508583 HELBQ8NG08 1087 aaPredicted RBP11.3□□□□□ -0.6
NUP54-207ENST00000508583 GPR101Q96P66 508 aaPredicted RBP11.3□□□□□ -0.6
NUP54-207ENST00000508583 MYO3BQ8WXR4 1341 aa11.3□□□□□ -0.6
NUP54-207ENST00000508583 WDR90Q96KV7 1748 aa11.29□□□□□ -0.6
NUP54-207ENST00000508583 SURF6O75683 361 aaKnown RBP11.29□□□□□ -0.6
NUP54-207ENST00000508583 ATP2B3Q16720 1220 aa11.29□□□□□ -0.6
NUP54-207ENST00000508583 DOK7Q18PE1 504 aa11.29□□□□□ -0.6
NUP54-207ENST00000508583 ATG9AQ7Z3C6 839 aa11.29□□□□□ -0.6
NUP54-207ENST00000508583 GNL3LQ9NVN8 582 aaKnown RBP11.29□□□□□ -0.6
NUP54-207ENST00000508583 PA2G4Q9UQ80 394 aaKnown RBP11.29□□□□□ -0.6
NUP54-207ENST00000508583 NOP58Q9Y2X3 529 aaKnown RBP11.29□□□□□ -0.6
NUP54-207ENST00000508583 GJA3Q9Y6H8 435 aa11.29□□□□□ -0.6
NUP54-207ENST00000508583 SCN4AP35499 1836 aa11.29□□□□□ -0.6
NUP54-207ENST00000508583 ZNF541Q9H0D2 1346 aa11.29□□□□□ -0.6
NUP54-207ENST00000508583 USP17L3A6NCW0 530 aa11.28□□□□□ -0.6
NUP54-207ENST00000508583 USP17L4A6NCW7 530 aa11.28□□□□□ -0.6
NUP54-207ENST00000508583 WTIPA6NIX2 430 aaPredicted RBP11.28□□□□□ -0.6
NUP54-207ENST00000508583 FRAT2O75474 233 aaPredicted RBP11.28□□□□□ -0.6
NUP54-207ENST00000508583 RAD17O75943 681 aa11.28□□□□□ -0.6
NUP54-207ENST00000508583 DDNO94850 711 aaPredicted RBP11.28□□□□□ -0.6
NUP54-207ENST00000508583 CENPBP07199 599 aaPredicted RBP11.28□□□□□ -0.6
NUP54-207ENST00000508583 HIBADHP31937 336 aaKnown RBP11.28□□□□□ -0.6
NUP54-207ENST00000508583 CXCL9Q07325 125 aa11.28□□□□□ -0.6
NUP54-207ENST00000508583 USP17L1Q7RTZ2 530 aa11.28□□□□□ -0.6
NUP54-207ENST00000508583 DPF2Q92785 391 aa11.28□□□□□ -0.6
NUP54-207ENST00000508583 NMRK2Q9NPI5 230 aa11.28□□□□□ -0.6
NUP54-207ENST00000508583 SUPT16HQ9Y5B9 1047 aaKnown RBP11.28□□□□□ -0.6
NUP54-207ENST00000508583 ZNF609O15014 1411 aa11.27□□□□□ -0.6
NUP54-207ENST00000508583 YDJCA8MPS7 323 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 RAB11FIP3O75154 756 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 IL1R1P14778 569 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 FGFR2P21802 821 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 STRIP1Q5VSL9 837 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 PNMA8AQ86V59 439 aaPredicted RBP11.27□□□□□ -0.61
NUP54-207ENST00000508583 AGBL3Q8NEM8 1001 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 CD209Q9NNX6 404 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 GPR108Q9NPR9 543 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 HACL1Q9UJ83 578 aa11.27□□□□□ -0.61
NUP54-207ENST00000508583 PSME4Q14997 1843 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 H7C1D1 291 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 PSMD14O00487 310 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 VIL1P09327 827 aaKnown RBP11.26□□□□□ -0.61
NUP54-207ENST00000508583 FKBP1AP62942 108 aaKnown RBP11.26□□□□□ -0.61
NUP54-207ENST00000508583 GORABQ5T7V8 394 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 TTLL5Q6EMB2 1281 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 RSBN1LQ6PCB5 846 aaPredicted RBP11.26□□□□□ -0.61
NUP54-207ENST00000508583 OGFOD1Q8N543 542 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 FBXW7Q969H0 707 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 CRBNQ96SW2 442 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 RRAGCQ9HB90 399 aa11.26□□□□□ -0.61
NUP54-207ENST00000508583 A0A1B0GUL7 405 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 SEMA3EO15041 775 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 ZBTB22O15209 634 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 SASH1O94885 1247 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 KLRK1P26718 216 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 GYG1P46976 350 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 GMPSP49915 693 aaPredicted RBP11.25□□□□□ -0.61
NUP54-207ENST00000508583 TFCP2Q12800 502 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 FBXO33Q7Z6M2 555 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 TXNRD3Q86VQ6 643 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 TBC1D22AQ8WUA7 517 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 KIF1BPQ96EK5 621 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 FAM84BQ96KN1 310 aaPredicted RBP11.25□□□□□ -0.61
NUP54-207ENST00000508583 GPRC5DQ9NZD1 345 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 HDAC9Q9UKV0 1011 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 IRS2Q9Y4H2 1338 aa11.25□□□□□ -0.61
NUP54-207ENST00000508583 ZNF646O15015 1829 aaPredicted RBP11.25□□□□□ -0.61
NUP54-207ENST00000508583 ARAP2Q8WZ64 1704 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 SNAP23O00161 211 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 KIF3CO14782 793 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 ABCB7O75027 752 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 TOMM70O94826 608 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 EPHX2P34913 555 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms