RNA–Protein interactions for RNA: ENST00000497993.5

TMEM39A-212, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 590 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-212ENST00000497993 GTF2IP78347 998 aa8.01□□□□□ -1.13
TMEM39A-212ENST00000497993 XPCQ01831 940 aaPredicted RBP8.01□□□□□ -1.13
TMEM39A-212ENST00000497993 C6orf118Q5T5N4 469 aa8.01□□□□□ -1.13
TMEM39A-212ENST00000497993 PMFBP1Q8TBY8 1022 aa8.01□□□□□ -1.13
TMEM39A-212ENST00000497993 FAM200AQ8TCP9 573 aa8.01□□□□□ -1.13
TMEM39A-212ENST00000497993 RGPD1P0DJD0 1748 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 TNS1Q9HBL0 1735 aaKnown RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 CAMTA1Q9Y6Y1 1673 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 A0A1W2PRU2 124 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 ATP2B4P23634 1241 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 BRD2P25440 801 aaKnown RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 ERCC5P28715 1186 aaPredicted RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 CLN3Q13286 438 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 MEX3CQ5U5Q3 659 aaKnown RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 LARP1Q6PKG0 1096 aaKnown RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 LARGE2Q8N3Y3 721 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 CARD11Q9BXL7 1154 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 ZNF395Q9H8N7 513 aaPredicted RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 TRPC5Q9UL62 973 aaPredicted RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 OVOS2A0A0J9YW53 1432 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 OVOS2Q6IE36 1432 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 EDC4Q6P2E9 1401 aaKnown RBP8□□□□□ -1.13
TMEM39A-212ENST00000497993 PEAK1Q9H792 1746 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 TTC21AQ8NDW8 1320 aa8□□□□□ -1.13
TMEM39A-212ENST00000497993 USP47Q96K76 1375 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L15C9J2P7 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L10C9JJH3 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L13C9JLJ4 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L12C9JPN9 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L11C9JVI0 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L21D6R901 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L18D6R9N7 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L22D6RA61 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L17D6RBQ6 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L19D6RCP7 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L20D6RJB6 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 GPC1P35052 558 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 USP17L24Q0WX57 530 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 FBXO33Q7Z6M2 555 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 UNC5CLQ8IV45 518 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 NGDNQ8NEJ9 315 aaKnown RBP7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 XAGE2Q96GT9 111 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 TRIM47Q96LD4 638 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 NLRP3Q96P20 1036 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 ESYT1Q9BSJ8 1104 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 PCGF6Q9BYE7 350 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 ARHGEF10LQ9HCE6 1279 aa7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 GMPR2Q9P2T1 348 aaKnown RBP7.99□□□□□ -1.13
TMEM39A-212ENST00000497993 RASA1P20936 1047 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 RXRBP28702 533 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 COL19A1Q14993 1142 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 VPS72Q15906 364 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 TSNAXIP1Q2TAA8 658 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 NOP9Q86U38 636 aaKnown RBP7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 OGFOD1Q8N543 542 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 NGLY1Q96IV0 654 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 DNAAF2Q9NVR5 837 aaKnown RBP7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 EGFL7Q9UHF1 273 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 USP21Q9UK80 565 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 LRRC37A3O60309 1634 aa7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 COL5A2P05997 1499 aaPredicted RBP7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 MAP2P11137 1827 aaKnown RBP7.98□□□□□ -1.13
TMEM39A-212ENST00000497993 TTLL8A6PVC2 850 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 MEN1O00255 615 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 ZBTB7BO15156 539 aaPredicted RBP7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 INHAP05111 366 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 RNF144AP50876 292 aaPredicted RBP7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 GDF10P55107 478 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 CLDN10P78369 228 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 C1orf216Q8TAB5 229 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 CNKSR1Q969H4 720 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 INSM2Q96T92 566 aaPredicted RBP7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 QTRT2Q9H974 415 aaKnown RBP7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 POLMQ9NP87 494 aaPredicted RBP7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 A0A1W2PP64 1363 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 AATKQ6ZMQ8 1374 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 ANKRD36BQ8N2N9 1353 aa7.97□□□□□ -1.13
TMEM39A-212ENST00000497993 C11orf95C9JLR9 678 aaPredicted RBP7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 ADAMTS2O95450 1211 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 IL2RAP01589 272 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 CTSOP43234 321 aaPredicted RBP7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 SCNN1DP51172 638 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 SWI5Q1ZZU3 235 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 CCDC102BQ68D86 513 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 DPH6Q7L8W6 267 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 ZSCAN29Q8IWY8 852 aaPredicted RBP7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 DHX37Q8IY37 1157 aaKnown RBP7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 SIX5Q8N196 739 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 ETNK1Q9HBU6 452 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 CABP1Q9NZU7 370 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 RBM19Q9Y4C8 960 aaKnown RBP7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 HRH3Q9Y5N1 445 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 KIAA0232Q92628 1395 aa7.96□□□□□ -1.14
TMEM39A-212ENST00000497993 RREB1Q92766 1687 aa7.95□□□□□ -1.14
TMEM39A-212ENST00000497993 SHANK3Q9BYB0 1731 aa7.95□□□□□ -1.14
TMEM39A-212ENST00000497993 RGPD2P0DJD1 1756 aa7.95□□□□□ -1.14
TMEM39A-212ENST00000497993 FAM83GA6ND36 823 aa7.95□□□□□ -1.14
TMEM39A-212ENST00000497993 TMEM229AB2RXF0 380 aa7.95□□□□□ -1.14
TMEM39A-212ENST00000497993 SCAMP3O14828 347 aaKnown RBP7.95□□□□□ -1.14
TMEM39A-212ENST00000497993 BACH1O14867 736 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms