RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 AK7Q96M32 723 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 MYL10Q9BUA6 226 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 JAK2O60674 1132 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 GIMAP6Q6P9H5 292 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 GPATCH11Q8N954 259 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CCDC191Q8NCU4 936 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 TTC41PQ6P2S7 1318 aa12.53□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 C6orf229H3BNL8 230 aa12.52□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 POLR3GO15318 223 aaPredicted RBP12.52□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 CCDC192P0DO97 292 aa12.52□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 MAGEB6Q8N7X4 407 aa12.52□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 UTP14AQ9BVJ6 771 aaKnown RBP12.52□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ZNF652Q9Y2D9 606 aa12.52□□□□□ -0.4
MSH5-SAPCD1-207ENST00000493662 ERVV-2B6SEH9 535 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SLC27A2O14975 620 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SYT1P21579 422 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ZNF445P59923 1031 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 LEKR1Q6ZMV7 388 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PI4K2BQ8TCG2 481 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SETDB2Q96T68 719 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 NOL10Q9BSC4 688 aaKnown RBP12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 BCL2L12Q9HB09 334 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 USP21Q9UK80 565 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 LOC102724428A0A0B4J2F2 783 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SLC5A1P13866 664 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SIK1P57059 783 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 KRT85P78386 507 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 USP48Q86UV5 1035 aa12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 NSFL1CQ9UNZ2 370 aaKnown RBP12.52□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PES1O00541 588 aaKnown RBP12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ATG3Q9NT62 314 aa12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PXDNQ92626 1479 aa12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 LARGE1O95461 756 aa12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 STK38Q15208 465 aa12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CCNL1Q9UK58 526 aaPredicted RBP12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 KLF18A0A0U1RQI7 1052 aa12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GADD45BO75293 160 aaPredicted RBP12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RBM5P52756 815 aaKnown RBP eCLIP12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 MAP3K12Q12852 859 aa12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SRP68Q9UHB9 627 aaKnown RBP12.51□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CRKLP46109 303 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GTF2A1P52655 376 aaPredicted RBP12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 KIF2CQ99661 725 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SH3TC1Q8TE82 1336 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RAD50Q92878 1312 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 IFIT3O14879 490 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PDCP20941 246 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CAVIN4Q5BKX8 364 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CCDC73Q6ZRK6 1079 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GNL3LQ9NVN8 582 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CCDC69A6NI79 296 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CYP7A1P22680 504 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GYG1P46976 350 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 BCAMP50895 628 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PDIA6Q15084 440 aa12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GPHNQ9NQX3 736 aaPredicted RBP12.5□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 hCG_1642624A0A1W2PR95 340 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RIOK3O14730 519 aaKnown RBP12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GABPB1Q06547 395 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CERS3Q8IU89 383 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ERCC4Q92889 916 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CCDC87Q9NVE4 849 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PHKA1P46020 1223 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ANKRD1Q15327 319 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ME3Q16798 604 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SKIDA1Q1XH10 827 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CCDC152Q4G0S7 254 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ANKRD18AQ8IVF6 992 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CMTR1Q8N1G2 835 aaKnown RBP12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 UBAC1Q9BSL1 405 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ARMT1Q9H993 441 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 TAF6LQ9Y6J9 622 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 HEG1Q9ULI3 1381 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 BIN1O00499 593 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RIMBP2O15034 1052 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 HSPA4P34932 840 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 NACAP1Q9BZK3 213 aa12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 KRT32Q14532 448 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PTPN14Q15678 1187 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 UVSSAQ2YD98 709 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RUFY3Q7L099 469 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ATP10DQ9P241 1426 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 POLA2Q14181 598 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CCDC183Q5T5S1 534 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 V9GYY5 206 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 NRKQ7Z2Y5 1582 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 B4E1Z4 1266 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RNF113AO15541 343 aaKnown RBP12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 MBD4O95243 580 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 KAZALD1Q96I82 304 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ZSCAN31Q96LW9 406 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 NLRP3Q96P20 1036 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CTNNA3Q9UI47 895 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SLC4A4Q9Y6R1 1079 aa12.48□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 HSP90B2PQ58FF3 399 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 USPL1Q5W0Q7 1092 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 MSL1Q68DK7 614 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 DZIP1Q86YF9 867 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms