RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 GRAPQ13588 217 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 LRRFIP1Q32MZ4 808 aaKnown RBP12.42□□□□□ -0.42
HDAC3-210ENST00000490808 PRPF40BQ6NWY9 871 aaKnown RBP12.42□□□□□ -0.42
HDAC3-210ENST00000490808 RTKN2Q8IZC4 609 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 RBM46Q8TBY0 533 aaKnown RBP12.42□□□□□ -0.42
HDAC3-210ENST00000490808 GRAPLQ8TC17 118 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-210ENST00000490808 ESYT1Q9BSJ8 1104 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 VPS33BQ9H267 617 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 DIAPH3Q9NSV4 1193 aa12.42□□□□□ -0.42
HDAC3-210ENST00000490808 DICER1Q9UPY3 1922 aaKnown RBP12.42□□□□□ -0.42
HDAC3-210ENST00000490808 ZC3H4Q9UPT8 1303 aaKnown RBP12.41□□□□□ -0.42
HDAC3-210ENST00000490808 SBF1O95248 1867 aa12.41□□□□□ -0.42
HDAC3-210ENST00000490808 ATP5JP18859 108 aa12.41□□□□□ -0.42
HDAC3-210ENST00000490808 TFCP2Q12800 502 aa12.41□□□□□ -0.42
HDAC3-210ENST00000490808 RABEP1Q15276 862 aa12.41□□□□□ -0.42
HDAC3-210ENST00000490808 CCDC93Q567U6 631 aa12.41□□□□□ -0.42
HDAC3-210ENST00000490808 SNX21Q969T3 373 aa12.41□□□□□ -0.42
HDAC3-210ENST00000490808 EAF2Q96CJ1 260 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-210ENST00000490808 USP26Q9BXU7 913 aa12.41□□□□□ -0.42
HDAC3-210ENST00000490808 CCDC8Q9H0W5 538 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-210ENST00000490808 CCDC158Q5M9N0 1113 aa12.4□□□□□ -0.42
HDAC3-210ENST00000490808 ARHGAP27Q6ZUM4 889 aa12.4□□□□□ -0.42
HDAC3-210ENST00000490808 TTLL11Q8NHH1 800 aa12.4□□□□□ -0.42
HDAC3-210ENST00000490808 KLHDC4Q8TBB5 520 aa12.4□□□□□ -0.42
HDAC3-210ENST00000490808 LRRC37AA6NMS7 1700 aa12.4□□□□□ -0.43
HDAC3-210ENST00000490808 ST18O60284 1047 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 ANAPC15P60006 121 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 RPS8P62241 208 aaKnown RBP12.39□□□□□ -0.43
HDAC3-210ENST00000490808 GORABQ5T7V8 394 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 TSHZ3Q63HK5 1081 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 LDHAL6AQ6ZMR3 332 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 SP8Q8IXZ3 490 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 CCDC24Q8N4L8 307 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 SUPT20HQ8NEM7 779 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 C7orf43Q8WVR3 580 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 NEUROD6Q96NK8 337 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 PSMD1Q99460 953 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 ATP6V0A2Q9Y487 856 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 CCDC88AQ3V6T2 1871 aa12.39□□□□□ -0.43
HDAC3-210ENST00000490808 RAD50Q92878 1312 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 PPEF1O14829 653 aaPredicted RBP12.38□□□□□ -0.43
HDAC3-210ENST00000490808 ITGA6P23229 1130 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 IGHMBP2P38935 993 aaKnown RBP12.38□□□□□ -0.43
HDAC3-210ENST00000490808 FSTL1Q12841 308 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 ATG9AQ7Z3C6 839 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 ANKRD18AQ8IVF6 992 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 SYNE4Q8N205 404 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.38□□□□□ -0.43
HDAC3-210ENST00000490808 ANO2Q9NQ90 1003 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 CNNM1Q9NRU3 951 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 RFX7Q2KHR2 1363 aa12.38□□□□□ -0.43
HDAC3-210ENST00000490808 MROH5Q6ZUA9 1318 aa12.37□□□□□ -0.43
HDAC3-210ENST00000490808 METTL24Q5JXM2 366 aa12.37□□□□□ -0.43
HDAC3-210ENST00000490808 MPHOSPH8Q99549 860 aa12.37□□□□□ -0.43
HDAC3-210ENST00000490808 FSD1Q9BTV5 496 aa12.37□□□□□ -0.43
HDAC3-210ENST00000490808 TAOK3Q9H2K8 898 aa12.37□□□□□ -0.43
HDAC3-210ENST00000490808 BSDC1Q9NW68 430 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-210ENST00000490808 TAF1P21675 1872 aa12.36□□□□□ -0.43
HDAC3-210ENST00000490808 SGSM2O43147 1006 aa12.36□□□□□ -0.43
HDAC3-210ENST00000490808 HSP90AA1P07900 732 aaKnown RBP12.36□□□□□ -0.43
HDAC3-210ENST00000490808 MCM2P49736 904 aa12.36□□□□□ -0.43
HDAC3-210ENST00000490808 FKBP4Q02790 459 aaKnown RBP eCLIP12.36□□□□□ -0.43
HDAC3-210ENST00000490808 C3orf67Q6ZVT6 689 aa12.36□□□□□ -0.43
HDAC3-210ENST00000490808 HAUS7Q99871 368 aa12.36□□□□□ -0.43
HDAC3-210ENST00000490808 BOLA2Q9H3K6 86 aa12.36□□□□□ -0.43
HDAC3-210ENST00000490808 PODXL2Q9NZ53 605 aa12.36□□□□□ -0.43
HDAC3-210ENST00000490808 SPEF2Q9C093 1822 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 A0A1B0GUL7 405 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 C21orf2O43822 256 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 MAP4K4O95819 1239 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-210ENST00000490808 LMNB1P20700 586 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 TTC39AQ5SRH9 613 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 C9orf131Q5VYM1 1079 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 ZNF594Q96JF6 807 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-210ENST00000490808 RTFDC1Q9BY42 306 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-210ENST00000490808 TBC1D2Q9BYX2 928 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 ANKRD2Q9GZV1 360 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 GREM2Q9H772 168 aa12.35□□□□□ -0.43
HDAC3-210ENST00000490808 DBNLQ9UJU6 430 aaKnown RBP12.35□□□□□ -0.43
HDAC3-210ENST00000490808 IFIT1P09914 478 aaKnown RBP12.34□□□□□ -0.43
HDAC3-210ENST00000490808 ATP2B3Q16720 1220 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 LRRC24Q50LG9 513 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 RNF20Q5VTR2 975 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 CWC27Q6UX04 472 aaKnown RBP12.34□□□□□ -0.43
HDAC3-210ENST00000490808 EYA3Q99504 573 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 DBNDD2Q9BQY9 259 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 RRAGCQ9HB90 399 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 ZNF609O15014 1411 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 SNED1Q8TER0 1413 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 XDHP47989 1333 aa12.34□□□□□ -0.43
HDAC3-210ENST00000490808 HSPA1AP0DMV8 641 aaKnown RBP12.33□□□□□ -0.44
HDAC3-210ENST00000490808 HSPA1BP0DMV9 641 aaKnown RBP12.33□□□□□ -0.44
HDAC3-210ENST00000490808 SLC5A1P13866 664 aa12.33□□□□□ -0.44
HDAC3-210ENST00000490808 TIMM10P62072 90 aa12.33□□□□□ -0.44
HDAC3-210ENST00000490808 TTF1Q15361 905 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-210ENST00000490808 ZSCAN25Q6NSZ9 544 aa12.33□□□□□ -0.44
HDAC3-210ENST00000490808 DPP8Q6V1X1 898 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-210ENST00000490808 MPNDQ8N594 471 aa12.33□□□□□ -0.44
HDAC3-210ENST00000490808 CELF1Q92879 486 aaKnown RBP12.33□□□□□ -0.44
HDAC3-210ENST00000490808 ANP32EQ9BTT0 268 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms