RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	PKN2	Q16513	984 aa	Known RBP	13.64	□□□□□ -0.23
HMGN1-215	ENST00000485550	ANGEL2	Q5VTE6	544 aa	Known RBP	13.64	□□□□□ -0.23
HMGN1-215	ENST00000485550	TRIM28	Q13263	835 aa	Known RBP	13.63	□□□□□ -0.23
HMGN1-215	ENST00000485550	SCARF1	Q14162	830 aa		13.63	□□□□□ -0.23
HMGN1-215	ENST00000485550	EYA3	Q99504	573 aa		13.63	□□□□□ -0.23
HMGN1-215	ENST00000485550	SEC31B	Q9NQW1	1179 aa		13.63	□□□□□ -0.23
HMGN1-215	ENST00000485550	VIL1	P09327	827 aa	Known RBP	13.62	□□□□□ -0.23
HMGN1-215	ENST00000485550	CCDC30	Q5VVM6	783 aa		13.62	□□□□□ -0.23
HMGN1-215	ENST00000485550	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.62	□□□□□ -0.23
HMGN1-215	ENST00000485550	GCC1	Q96CN9	775 aa		13.62	□□□□□ -0.23
HMGN1-215	ENST00000485550	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.62	□□□□□ -0.23
HMGN1-215	ENST00000485550	SALL2	Q9Y467	1007 aa	Predicted RBP	13.62	□□□□□ -0.23
HMGN1-215	ENST00000485550	SPEF2	Q9C093	1822 aa		13.62	□□□□□ -0.23
HMGN1-215	ENST00000485550	UBE2Q2L	H0YL09	131 aa		13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550	GPR25	O00155	361 aa		13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550	RPS8	P62241	208 aa	Known RBP	13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550	MKRN3	Q13064	507 aa	Known RBP	13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550	HABP4	Q5JVS0	413 aa	Known RBP	13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550	PRAMEF18	Q5VWM3	479 aa		13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550	TBC1D16	Q8TBP0	767 aa		13.61	□□□□□ -0.23
HMGN1-215	ENST00000485550		G3V3G9	751 aa		13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	DDX58	O95786	925 aa	Known RBP	13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	FKBP1B	P68106	108 aa		13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	DCAF8	Q5TAQ9	597 aa		13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	WWC1	Q8IX03	1113 aa		13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	CCDC191	Q8NCU4	936 aa		13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	METTL22	Q9BUU2	404 aa	Predicted RBP	13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	MRS2	Q9HD23	443 aa		13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	CWC25	Q9NXE8	425 aa	Predicted RBP	13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	MAP3K2	Q9Y2U5	619 aa		13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	ZNF646	O15015	1829 aa	Predicted RBP	13.6	□□□□□ -0.23
HMGN1-215	ENST00000485550	MKI67	P46013	3256 aa	Known RBP	13.59	□□□□□ -0.23
HMGN1-215	ENST00000485550	PI4KAP2	A4QPH2	592 aa		13.59	□□□□□ -0.23
HMGN1-215	ENST00000485550	PCCA	P05165	728 aa	Predicted RBP	13.59	□□□□□ -0.23
HMGN1-215	ENST00000485550	ZNF280A	P59817	542 aa	Predicted RBP	13.59	□□□□□ -0.23
HMGN1-215	ENST00000485550	TTLL12	Q14166	644 aa	Predicted RBP	13.59	□□□□□ -0.23
HMGN1-215	ENST00000485550	PI4KAP1	Q8N8J0	262 aa		13.59	□□□□□ -0.23
HMGN1-215	ENST00000485550	R3HDML	Q9H3Y0	253 aa		13.59	□□□□□ -0.23
HMGN1-215	ENST00000485550	ANP32C	O43423	234 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	PDE8A	O60658	829 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	UFL1	O94874	794 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	ZEB1	P37275	1124 aa	Predicted RBP	13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	TWISTNB	Q3B726	338 aa	Predicted RBP	13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	KSR2	Q6VAB6	950 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	G2E3	Q7L622	706 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	AGBL3	Q8NEM8	1001 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	STK31	Q9BXU1	1019 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	MYOZ2	Q9NPC6	264 aa		13.58	□□□□□ -0.24
HMGN1-215	ENST00000485550	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	FKTN	O75072	461 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	GABBR2	O75899	941 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	TM4SF4	P48230	202 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	CCDC27	Q2M243	656 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	CCDC152	Q4G0S7	254 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	CHMP4A	Q9BY43	222 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	ANKIB1	Q9P2G1	1089 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	CEP290	O15078	2479 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	PITPNM2	Q9BZ72	1349 aa		13.57	□□□□□ -0.24
HMGN1-215	ENST00000485550	MYH3	P11055	1940 aa		13.56	□□□□□ -0.24
HMGN1-215	ENST00000485550	POTEF	A5A3E0	1075 aa		13.56	□□□□□ -0.24
HMGN1-215	ENST00000485550	IGKV5-2	P06315	115 aa		13.56	□□□□□ -0.24
HMGN1-215	ENST00000485550	USP17L8	P0C7I0	530 aa		13.56	□□□□□ -0.24
HMGN1-215	ENST00000485550	HSP90B1	P14625	803 aa	Known RBP	13.56	□□□□□ -0.24
HMGN1-215	ENST00000485550	CWF19L2	Q2TBE0	894 aa	Known RBP	13.56	□□□□□ -0.24
HMGN1-215	ENST00000485550	CENPF	P49454	3210 aa		13.56	□□□□□ -0.24
HMGN1-215	ENST00000485550	PRKG1	Q13976	671 aa		13.55	□□□□□ -0.24
HMGN1-215	ENST00000485550	NBPF9	Q3BBW0	867 aa		13.55	□□□□□ -0.24
HMGN1-215	ENST00000485550	GML	Q99445	158 aa		13.55	□□□□□ -0.24
HMGN1-215	ENST00000485550	PODXL2	Q9NZ53	605 aa		13.55	□□□□□ -0.24
HMGN1-215	ENST00000485550	GGA1	Q9UJY5	639 aa		13.55	□□□□□ -0.24
HMGN1-215	ENST00000485550	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.55	□□□□□ -0.24
HMGN1-215	ENST00000485550	ZNF609	O15014	1411 aa		13.55	□□□□□ -0.24
HMGN1-215	ENST00000485550	HTT	P42858	3142 aa		13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	LAMB1	P07942	1786 aa		13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	WTIP	A6NIX2	430 aa	Predicted RBP	13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	NEXN	Q0ZGT2	675 aa		13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	SREBF2	Q12772	1141 aa		13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	NOM1	Q5C9Z4	860 aa	Known RBP	13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	ANKRD18A	Q8IVF6	992 aa		13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	TRIM17	Q9Y577	477 aa		13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	TRIOBP	Q9H2D6	2365 aa		13.54	□□□□□ -0.24
HMGN1-215	ENST00000485550	ECM29	Q5VYK3	1845 aa		13.53	□□□□□ -0.24
HMGN1-215	ENST00000485550	NEURL1B	A8MQ27	555 aa		13.53	□□□□□ -0.24
HMGN1-215	ENST00000485550	CTSW	P56202	376 aa		13.53	□□□□□ -0.24
HMGN1-215	ENST00000485550	PTPN12	Q05209	780 aa	Known RBP	13.53	□□□□□ -0.24
HMGN1-215	ENST00000485550	FAM9B	Q8IZU0	186 aa		13.53	□□□□□ -0.24
HMGN1-215	ENST00000485550	MXD3	Q9BW11	206 aa		13.53	□□□□□ -0.24
HMGN1-215	ENST00000485550	USP17L3	A6NCW0	530 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	USP17L4	A6NCW7	530 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	SPDYE4	A6NLX3	237 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	NF2	P35240	595 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	FXR1	P51114	621 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	EXOSC9	Q06265	439 aa	Known RBP	13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	FLII	Q13045	1269 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	FKBP5	Q13451	457 aa	Predicted RBP	13.52	□□□□□ -0.25

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