RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ZBTB40Q9NUA8 1239 aa28.38■■■□□ 2.13
CCDC28B-203ENST00000461819 VGLL2Q8N8G2 317 aa28.37■■■□□ 2.13
CCDC28B-203ENST00000461819 COA1Q9GZY4 146 aa28.37■■■□□ 2.13
CCDC28B-203ENST00000461819 VEGFAP15692 232 aaPredicted RBP28.36■■■□□ 2.13
CCDC28B-203ENST00000461819 CEP85Q6P2H3 762 aa28.36■■■□□ 2.13
CCDC28B-203ENST00000461819 C15orf52Q6ZUT6 534 aaKnown RBP28.36■■■□□ 2.13
CCDC28B-203ENST00000461819 ZNF804AQ7Z570 1209 aa28.36■■■□□ 2.13
CCDC28B-203ENST00000461819 L3MBTL3Q96JM7 780 aaPredicted RBP28.36■■■□□ 2.13
CCDC28B-203ENST00000461819 POLA2Q14181 598 aa28.35■■■□□ 2.13
CCDC28B-203ENST00000461819 PUM3Q15397 648 aaKnown RBP28.35■■■□□ 2.13
CCDC28B-203ENST00000461819 PODNQ7Z5L7 613 aa28.35■■■□□ 2.13
CCDC28B-203ENST00000461819 SSH3Q8TE77 659 aa28.35■■■□□ 2.13
CCDC28B-203ENST00000461819 CEP126Q9P2H0 1117 aa28.35■■■□□ 2.13
CCDC28B-203ENST00000461819 IRS2Q9Y4H2 1338 aa28.35■■■□□ 2.13
CCDC28B-203ENST00000461819 IQCA1LA6NCM1 817 aa28.34■■■□□ 2.13
CCDC28B-203ENST00000461819 C16orf71Q8IYS4 520 aaPredicted RBP28.34■■■□□ 2.13
CCDC28B-203ENST00000461819 KCNQ5Q9NR82 932 aa28.34■■■□□ 2.13
CCDC28B-203ENST00000461819 PSMD14O00487 310 aa28.33■■■□□ 2.13
CCDC28B-203ENST00000461819 KIF3CO14782 793 aa28.33■■■□□ 2.13
CCDC28B-203ENST00000461819 LMOD1P29536 600 aaPredicted RBP28.33■■■□□ 2.13
CCDC28B-203ENST00000461819 G3BP1Q13283 466 aaKnown RBP eCLIP28.33■■■□□ 2.13
CCDC28B-203ENST00000461819 ZNF646O15015 1829 aaPredicted RBP28.32■■■□□ 2.12
CCDC28B-203ENST00000461819 FBXW7Q969H0 707 aa28.32■■■□□ 2.12
CCDC28B-203ENST00000461819 HACL1Q9UJ83 578 aa28.32■■■□□ 2.12
CCDC28B-203ENST00000461819 ARAP2Q8WZ64 1704 aa28.32■■■□□ 2.12
CCDC28B-203ENST00000461819 MYH13Q9UKX3 1938 aa28.31■■■□□ 2.12
CCDC28B-203ENST00000461819 POTECB2RU33 542 aa28.31■■■□□ 2.12
CCDC28B-203ENST00000461819 IFIT1P09914 478 aaKnown RBP28.31■■■□□ 2.12
CCDC28B-203ENST00000461819 SLC5A1P13866 664 aa28.31■■■□□ 2.12
CCDC28B-203ENST00000461819 GMPSP49915 693 aaPredicted RBP28.31■■■□□ 2.12
CCDC28B-203ENST00000461819 OS9Q13438 667 aaPredicted RBP28.31■■■□□ 2.12
CCDC28B-203ENST00000461819 GYG1P46976 350 aa28.3■■■□□ 2.12
CCDC28B-203ENST00000461819 ATP2B3Q16720 1220 aa28.3■■■□□ 2.12
CCDC28B-203ENST00000461819 RPAP2Q8IXW5 612 aaPredicted RBP28.3■■■□□ 2.12
CCDC28B-203ENST00000461819 CD209Q9NNX6 404 aa28.3■■■□□ 2.12
CCDC28B-203ENST00000461819 USP17L3A6NCW0 530 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 USP17L4A6NCW7 530 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 SURF6O75683 361 aaKnown RBP28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 FGFR2P21802 821 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 SCNN1DP51172 638 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 CAVIN4Q5BKX8 364 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 USP17L1Q7RTZ2 530 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 VPS37DQ86XT2 251 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 LPIN2Q92539 896 aa28.29■■■□□ 2.12
CCDC28B-203ENST00000461819 HMMRO75330 724 aa28.28■■■□□ 2.12
CCDC28B-203ENST00000461819 HIBADHP31937 336 aaKnown RBP28.28■■■□□ 2.12
CCDC28B-203ENST00000461819 TFCP2Q12800 502 aa28.28■■■□□ 2.12
CCDC28B-203ENST00000461819 ZBTB12Q9Y330 459 aaPredicted RBP28.28■■■□□ 2.12
CCDC28B-203ENST00000461819 SUPT16HQ9Y5B9 1047 aaKnown RBP28.28■■■□□ 2.12
CCDC28B-203ENST00000461819 VIL1P09327 827 aaKnown RBP28.27■■■□□ 2.12
CCDC28B-203ENST00000461819 FAM84BQ96KN1 310 aaPredicted RBP28.27■■■□□ 2.12
CCDC28B-203ENST00000461819 CRBNQ96SW2 442 aa28.27■■■□□ 2.12
CCDC28B-203ENST00000461819 GPRC5DQ9NZD1 345 aa28.27■■■□□ 2.12
CCDC28B-203ENST00000461819 IL1R1P14778 569 aa28.26■■■□□ 2.11
CCDC28B-203ENST00000461819 RPS12P25398 132 aaKnown RBP28.26■■■□□ 2.11
CCDC28B-203ENST00000461819 EPHX2P34913 555 aa28.26■■■□□ 2.11
CCDC28B-203ENST00000461819 TAF1DQ9H5J8 278 aaPredicted RBP28.26■■■□□ 2.11
CCDC28B-203ENST00000461819 STRIP1Q5VSL9 837 aa28.25■■■□□ 2.11
CCDC28B-203ENST00000461819 RSBN1LQ6PCB5 846 aaPredicted RBP28.25■■■□□ 2.11
CCDC28B-203ENST00000461819 AKAP2Q9Y2D5 859 aa28.25■■■□□ 2.11
CCDC28B-203ENST00000461819 EPS15P42566 896 aa28.24■■■□□ 2.11
CCDC28B-203ENST00000461819 GTF2IP78347 998 aa28.24■■■□□ 2.11
CCDC28B-203ENST00000461819 TTLL5Q6EMB2 1281 aa28.24■■■□□ 2.11
CCDC28B-203ENST00000461819 NOP58Q9Y2X3 529 aaKnown RBP28.24■■■□□ 2.11
CCDC28B-203ENST00000461819 TOMM70O94826 608 aa28.23■■■□□ 2.11
CCDC28B-203ENST00000461819 EAPPQ56P03 285 aaPredicted RBP28.23■■■□□ 2.11
CCDC28B-203ENST00000461819 DACT2Q5SW24 774 aa28.23■■■□□ 2.11
CCDC28B-203ENST00000461819 CNOT7Q9UIV1 285 aaKnown RBP28.23■■■□□ 2.11
CCDC28B-203ENST00000461819 ZNF609O15014 1411 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 FRAT2O75474 233 aaPredicted RBP28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 SASH1O94885 1247 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 BCAMP50895 628 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 FBXO33Q7Z6M2 555 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 SIRT2Q8IXJ6 389 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 MICALL2Q8IY33 904 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 AGBL3Q8NEM8 1001 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 DPF2Q92785 391 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 EXOC6BQ9Y2D4 811 aa28.22■■■□□ 2.11
CCDC28B-203ENST00000461819 MYO3BQ8WXR4 1341 aa28.21■■■□□ 2.11
CCDC28B-203ENST00000461819 A0A1B0GUL7 405 aa28.21■■■□□ 2.11
CCDC28B-203ENST00000461819 H7C1D1 291 aa28.21■■■□□ 2.11
CCDC28B-203ENST00000461819 PNMA8AQ86V59 439 aaPredicted RBP28.21■■■□□ 2.11
CCDC28B-203ENST00000461819 TDRD7Q8NHU6 1098 aaKnown RBP28.21■■■□□ 2.11
CCDC28B-203ENST00000461819 IQSEC3Q9UPP2 1182 aaPredicted RBP28.21■■■□□ 2.11
CCDC28B-203ENST00000461819 HSP90AB4PQ58FF6 505 aa28.2■■■□□ 2.1
CCDC28B-203ENST00000461819 MXD3Q9BW11 206 aa28.2■■■□□ 2.1
CCDC28B-203ENST00000461819 ADARB2Q9NS39 739 aaKnown RBP28.2■■■□□ 2.1
CCDC28B-203ENST00000461819 JAG2Q9Y219 1238 aa28.2■■■□□ 2.1
CCDC28B-203ENST00000461819 SHTN1A0MZ66 631 aa28.19■■■□□ 2.1
CCDC28B-203ENST00000461819 TIMM10P62072 90 aa28.19■■■□□ 2.1
CCDC28B-203ENST00000461819 ERC1Q8IUD2 1116 aa28.19■■■□□ 2.1
CCDC28B-203ENST00000461819 RBM46Q8TBY0 533 aaKnown RBP28.19■■■□□ 2.1
CCDC28B-203ENST00000461819 NEUROD6Q96NK8 337 aa28.19■■■□□ 2.1
CCDC28B-203ENST00000461819 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.19■■■□□ 2.1
CCDC28B-203ENST00000461819 ADAMTSL1Q8N6G6 1762 aa28.19■■■□□ 2.1
CCDC28B-203ENST00000461819 ADORA1P30542 326 aa28.18■■■□□ 2.1
CCDC28B-203ENST00000461819 POTEIP0CG38 1075 aa28.17■■■□□ 2.1
CCDC28B-203ENST00000461819 POTEJP0CG39 1038 aa28.17■■■□□ 2.1
CCDC28B-203ENST00000461819 CHAF1AQ13111 956 aaPredicted RBP28.17■■■□□ 2.1
CCDC28B-203ENST00000461819 USP50Q70EL3 339 aaPredicted RBP28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms