RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 ATP5J2-PTCD1G3V325 749 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 ARHGAP33O14559 1287 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 TNIP1Q15025 636 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 SF3B3Q15393 1217 aaKnown RBP11.22□□□□□ -0.61
HDAC9-220ENST00000461409 RIC3Q7Z5B4 369 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 ZNF454Q8N9F8 522 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 FAM89AQ96GI7 184 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 CDHR2Q9BYE9 1310 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 ADARB2Q9NS39 739 aaKnown RBP11.22□□□□□ -0.61
HDAC9-220ENST00000461409 GPRC5DQ9NZD1 345 aa11.22□□□□□ -0.61
HDAC9-220ENST00000461409 DPYSL4O14531 572 aa11.21□□□□□ -0.61
HDAC9-220ENST00000461409 IRS4O14654 1257 aaPredicted RBP11.21□□□□□ -0.61
HDAC9-220ENST00000461409 DDX58O95786 925 aaKnown RBP11.21□□□□□ -0.61
HDAC9-220ENST00000461409 EPS15P42566 896 aa11.21□□□□□ -0.61
HDAC9-220ENST00000461409 CXCL9Q07325 125 aa11.21□□□□□ -0.61
HDAC9-220ENST00000461409 CIAPIN1Q6FI81 312 aa11.21□□□□□ -0.61
HDAC9-220ENST00000461409 TNS4Q8IZW8 715 aa11.21□□□□□ -0.61
HDAC9-220ENST00000461409 LAMB2P55268 1798 aa11.21□□□□□ -0.62
HDAC9-220ENST00000461409 RASSF10A6NK89 507 aa11.2□□□□□ -0.62
HDAC9-220ENST00000461409 VEGFBP49765 207 aa11.2□□□□□ -0.62
HDAC9-220ENST00000461409 GMPSP49915 693 aaPredicted RBP11.2□□□□□ -0.62
HDAC9-220ENST00000461409 CCDC30Q5VVM6 783 aa11.2□□□□□ -0.62
HDAC9-220ENST00000461409 ZBTB38Q8NAP3 1195 aaPredicted RBP11.2□□□□□ -0.62
HDAC9-220ENST00000461409 ZNF428Q96B54 188 aa11.2□□□□□ -0.62
HDAC9-220ENST00000461409 AIDAQ96BJ3 306 aa11.2□□□□□ -0.62
HDAC9-220ENST00000461409 BCL2L13Q9BXK5 485 aa11.2□□□□□ -0.62
HDAC9-220ENST00000461409 TSHZ2Q9NRE2 1034 aa11.2□□□□□ -0.62
HDAC9-220ENST00000461409 ABT1Q9ULW3 272 aaKnown RBP11.2□□□□□ -0.62
HDAC9-220ENST00000461409 LTBP1Q14766 1721 aa11.19□□□□□ -0.62
HDAC9-220ENST00000461409 ELL2O00472 640 aaPredicted RBP11.19□□□□□ -0.62
HDAC9-220ENST00000461409 WASHC4Q2M389 1173 aa11.19□□□□□ -0.62
HDAC9-220ENST00000461409 DEFB115Q30KQ5 88 aa11.19□□□□□ -0.62
HDAC9-220ENST00000461409 RTL5Q5HYW3 569 aaPredicted RBP11.19□□□□□ -0.62
HDAC9-220ENST00000461409 CCDC191Q8NCU4 936 aa11.19□□□□□ -0.62
HDAC9-220ENST00000461409 CELF1Q92879 486 aaKnown RBP11.19□□□□□ -0.62
HDAC9-220ENST00000461409 EYA3Q99504 573 aa11.19□□□□□ -0.62
HDAC9-220ENST00000461409 NSFL1CQ9UNZ2 370 aaKnown RBP11.19□□□□□ -0.62
HDAC9-220ENST00000461409 LRRC37AA6NMS7 1700 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 DDX60Q8IY21 1712 aaKnown RBP11.18□□□□□ -0.62
HDAC9-220ENST00000461409 C6orf229H3BNL8 230 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 RAD17O75943 681 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 PSEN2P49810 448 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 RPS8P62241 208 aaKnown RBP11.18□□□□□ -0.62
HDAC9-220ENST00000461409 CCDC27Q2M243 656 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 CCDC152Q4G0S7 254 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 C8orf58Q8NAV2 365 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 ZC3H15Q8WU90 426 aaKnown RBP11.18□□□□□ -0.62
HDAC9-220ENST00000461409 MYD88Q99836 296 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 STK31Q9BXU1 1019 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 PHAXQ9H814 394 aaKnown RBP11.18□□□□□ -0.62
HDAC9-220ENST00000461409 CWC25Q9NXE8 425 aaPredicted RBP11.18□□□□□ -0.62
HDAC9-220ENST00000461409 DUOX1Q9NRD9 1551 aa11.18□□□□□ -0.62
HDAC9-220ENST00000461409 H7C1D1 291 aa11.17□□□□□ -0.62
HDAC9-220ENST00000461409 PCCAP05165 728 aaPredicted RBP11.17□□□□□ -0.62
HDAC9-220ENST00000461409 ECE1P42892 770 aa11.17□□□□□ -0.62
HDAC9-220ENST00000461409 CTCFP49711 727 aaPredicted RBP11.17□□□□□ -0.62
HDAC9-220ENST00000461409 E2F4Q16254 413 aa11.17□□□□□ -0.62
HDAC9-220ENST00000461409 DMRTA1Q5VZB9 504 aa11.17□□□□□ -0.62
HDAC9-220ENST00000461409 WDR33Q9C0J8 1336 aaKnown RBP11.16□□□□□ -0.62
HDAC9-220ENST00000461409 YDJCA8MPS7 323 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 FOXN1O15353 648 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 PDE8AO60658 829 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 RPS12P25398 132 aaKnown RBP11.16□□□□□ -0.62
HDAC9-220ENST00000461409 ZEB1P37275 1124 aaPredicted RBP11.16□□□□□ -0.62
HDAC9-220ENST00000461409 GPSM2P81274 684 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 MAP2K1Q02750 393 aaPredicted RBP11.16□□□□□ -0.62
HDAC9-220ENST00000461409 NEXNQ0ZGT2 675 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 DPF2Q92785 391 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 METTL22Q9BUU2 404 aaPredicted RBP11.16□□□□□ -0.62
HDAC9-220ENST00000461409 PRDM10Q9NQV6 1147 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 ANKIB1Q9P2G1 1089 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 POLLQ9UGP5 575 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 PGAP2Q9UHJ9 254 aa11.16□□□□□ -0.62
HDAC9-220ENST00000461409 CNOT7Q9UIV1 285 aaKnown RBP11.16□□□□□ -0.62
HDAC9-220ENST00000461409 IL16Q14005 1332 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 TRAF5O00463 557 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 KSR2Q6VAB6 950 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 WWC1Q8IX03 1113 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 TSPYL6Q8N831 410 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 TBC1D16Q8TBP0 767 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 TSR2Q969E8 191 aaKnown RBP11.15□□□□□ -0.62
HDAC9-220ENST00000461409 ZC3H12CQ9C0D7 883 aaKnown RBP11.15□□□□□ -0.62
HDAC9-220ENST00000461409 DBNDD1Q9H9R9 158 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 WDR70Q9NW82 654 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 WBP1LQ9NX94 342 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 PODXL2Q9NZ53 605 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 MAP3K2Q9Y2U5 619 aa11.15□□□□□ -0.62
HDAC9-220ENST00000461409 ARIH1Q9Y4X5 557 aaPredicted RBP11.15□□□□□ -0.62
HDAC9-220ENST00000461409 PSMD14O00487 310 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 ECE2O60344 883 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 UFL1O94874 794 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 TWISTNBQ3B726 338 aaPredicted RBP11.14□□□□□ -0.63
HDAC9-220ENST00000461409 CST9Q5W186 159 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 CDC37L1Q7L3B6 337 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 ANKRD18AQ8IVF6 992 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 TRPM4Q8TD43 1214 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 ZDHHC16Q969W1 377 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 CAPNS2Q96L46 248 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 KCNK17Q96T54 332 aa11.14□□□□□ -0.63
HDAC9-220ENST00000461409 CDC5LQ99459 802 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms