RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SOGA3Q5TF21 947 aa22.11■■□□□ 1.13
SDC1-203ENST00000403076 ECHDC1Q9NTX5 307 aa22.11■■□□□ 1.13
SDC1-203ENST00000403076 GRIPAP1Q4V328 841 aa22.11■■□□□ 1.13
SDC1-203ENST00000403076 TTC39AQ5SRH9 613 aa22.11■■□□□ 1.13
SDC1-203ENST00000403076 TSHZ3Q63HK5 1081 aa22.11■■□□□ 1.13
SDC1-203ENST00000403076 TBC1D16Q8TBP0 767 aa22.11■■□□□ 1.13
SDC1-203ENST00000403076 TTC41PQ6P2S7 1318 aa22.1■■□□□ 1.13
SDC1-203ENST00000403076 SALL3Q9BXA9 1300 aa22.1■■□□□ 1.13
SDC1-203ENST00000403076 ERC2O15083 957 aa22.1■■□□□ 1.13
SDC1-203ENST00000403076 CAVIN4Q5BKX8 364 aa22.1■■□□□ 1.13
SDC1-203ENST00000403076 VPS37DQ86XT2 251 aa22.1■■□□□ 1.13
SDC1-203ENST00000403076 STAP2Q9UGK3 403 aa22.1■■□□□ 1.13
SDC1-203ENST00000403076 POLLQ9UGP5 575 aa22.1■■□□□ 1.13
SDC1-203ENST00000403076 LRRC37AA6NMS7 1700 aa22.09■■□□□ 1.13
SDC1-203ENST00000403076 RTKN2Q8IZC4 609 aa22.09■■□□□ 1.13
SDC1-203ENST00000403076 GPR101Q96P66 508 aaPredicted RBP22.09■■□□□ 1.13
SDC1-203ENST00000403076 A0A1B0GUL6 1792 aa22.08■■□□□ 1.13
SDC1-203ENST00000403076 GYG1P46976 350 aa22.08■■□□□ 1.13
SDC1-203ENST00000403076 EYA3Q99504 573 aa22.08■■□□□ 1.13
SDC1-203ENST00000403076 KLRK1P26718 216 aa22.07■■□□□ 1.12
SDC1-203ENST00000403076 BCAMP50895 628 aa22.07■■□□□ 1.12
SDC1-203ENST00000403076 OSBPL3Q9H4L5 887 aa22.07■■□□□ 1.12
SDC1-203ENST00000403076 AOX1Q06278 1338 aa22.07■■□□□ 1.12
SDC1-203ENST00000403076 RIMBP2O15034 1052 aa22.06■■□□□ 1.12
SDC1-203ENST00000403076 GLRX3O76003 335 aaKnown RBP22.06■■□□□ 1.12
SDC1-203ENST00000403076 PHKA1P46020 1223 aa22.06■■□□□ 1.12
SDC1-203ENST00000403076 CCDC102BQ68D86 513 aa22.06■■□□□ 1.12
SDC1-203ENST00000403076 SUPT20HQ8NEM7 779 aa22.06■■□□□ 1.12
SDC1-203ENST00000403076 FAM84BQ96KN1 310 aaPredicted RBP22.06■■□□□ 1.12
SDC1-203ENST00000403076 ZC3H12CQ9C0D7 883 aaKnown RBP22.06■■□□□ 1.12
SDC1-203ENST00000403076 GNL3LQ9NVN8 582 aaKnown RBP22.06■■□□□ 1.12
SDC1-203ENST00000403076 ATP5JP18859 108 aa22.06■■□□□ 1.12
SDC1-203ENST00000403076 HIBADHP31937 336 aaKnown RBP22.06■■□□□ 1.12
SDC1-203ENST00000403076 WASHC4Q2M389 1173 aa22.06■■□□□ 1.12
SDC1-203ENST00000403076 ZNF804AQ7Z570 1209 aa22.06■■□□□ 1.12
SDC1-203ENST00000403076 UQCRFS1P1P0C7P4 283 aa22.05■■□□□ 1.12
SDC1-203ENST00000403076 C15orf52Q6ZUT6 534 aaKnown RBP22.05■■□□□ 1.12
SDC1-203ENST00000403076 TXNRD3Q86VQ6 643 aa22.05■■□□□ 1.12
SDC1-203ENST00000403076 PELP1Q8IZL8 1130 aaKnown RBP22.05■■□□□ 1.12
SDC1-203ENST00000403076 BOLA2Q9H3K6 86 aa22.05■■□□□ 1.12
SDC1-203ENST00000403076 G3V3G9 751 aa22.04■■□□□ 1.12
SDC1-203ENST00000403076 FRAT2O75474 233 aaPredicted RBP22.04■■□□□ 1.12
SDC1-203ENST00000403076 TTC22Q5TAA0 569 aa22.04■■□□□ 1.12
SDC1-203ENST00000403076 DCAF8Q5TAQ9 597 aa22.04■■□□□ 1.12
SDC1-203ENST00000403076 FBXO33Q7Z6M2 555 aa22.04■■□□□ 1.12
SDC1-203ENST00000403076 PI4K2BQ8TCG2 481 aa22.04■■□□□ 1.12
SDC1-203ENST00000403076 RTFDC1Q9BY42 306 aaPredicted RBP22.04■■□□□ 1.12
SDC1-203ENST00000403076 BRCA1P38398 1863 aaKnown RBP22.04■■□□□ 1.12
SDC1-203ENST00000403076 MED23Q9ULK4 1368 aa22.03■■□□□ 1.12
SDC1-203ENST00000403076 FKBP4Q02790 459 aaKnown RBP eCLIP22.02■■□□□ 1.123e-7■■■□□ 19.2
SDC1-203ENST00000403076 PSMD1Q99460 953 aa22.02■■□□□ 1.12
SDC1-203ENST00000403076 DNAJC2Q99543 621 aaKnown RBP22.02■■□□□ 1.12
SDC1-203ENST00000403076 IQSEC3Q9UPP2 1182 aaPredicted RBP22.02■■□□□ 1.12
SDC1-203ENST00000403076 TRIM6-TRIM34B2RNG4 842 aa22.01■■□□□ 1.11
SDC1-203ENST00000403076 MAP4K4O95819 1239 aaPredicted RBP22.01■■□□□ 1.11
SDC1-203ENST00000403076 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.01■■□□□ 1.11
SDC1-203ENST00000403076 ZNF512BQ96KM6 892 aaPredicted RBP22.01■■□□□ 1.11
SDC1-203ENST00000403076 SNRKQ9NRH2 765 aa22.01■■□□□ 1.11
SDC1-203ENST00000403076 ARAP2Q8WZ64 1704 aa22.01■■□□□ 1.11
SDC1-203ENST00000403076 IRS2Q9Y4H2 1338 aa22.01■■□□□ 1.11
SDC1-203ENST00000403076 LTBP1Q14766 1721 aa22.01■■□□□ 1.11
SDC1-203ENST00000403076 ARID4AP29374 1257 aaPredicted RBP22.01■■□□□ 1.11
SDC1-203ENST00000403076 PPIP5K2O43314 1243 aa22■■□□□ 1.11
SDC1-203ENST00000403076 TAOK3Q9H2K8 898 aa22■■□□□ 1.11
SDC1-203ENST00000403076 DUOX1Q9NRD9 1551 aa22■■□□□ 1.11
SDC1-203ENST00000403076 SNED1Q8TER0 1413 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 MCAMP43121 646 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 SCARF1Q14162 830 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 AOC3Q16853 763 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 DOK7Q18PE1 504 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 BMP2KLQ5H9B9 411 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 RILPL2Q969X0 211 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 HAUS7Q99871 368 aa21.99■■□□□ 1.11
SDC1-203ENST00000403076 ZNF277Q9NRM2 450 aaPredicted RBP21.99■■□□□ 1.11
SDC1-203ENST00000403076 GSPT1P15170 499 aaKnown RBP21.98■■□□□ 1.11
SDC1-203ENST00000403076 KIAA2012Q0VF49 1180 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 RASGRF1Q13972 1273 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 ARHGAP27Q6ZUM4 889 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 SPATA5Q8NB90 893 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 COA1Q9GZY4 146 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 CD209Q9NNX6 404 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 DENND2AQ9ULE3 1009 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 NDUFB9Q9Y6M9 179 aa21.98■■□□□ 1.11
SDC1-203ENST00000403076 SEMA3EO15041 775 aa21.97■■□□□ 1.11
SDC1-203ENST00000403076 ZAP70P43403 619 aa21.97■■□□□ 1.11
SDC1-203ENST00000403076 PI16Q6UXB8 463 aa21.97■■□□□ 1.11
SDC1-203ENST00000403076 CNTROBQ8N137 903 aa21.97■■□□□ 1.11
SDC1-203ENST00000403076 LARGE2Q8N3Y3 721 aa21.97■■□□□ 1.11
SDC1-203ENST00000403076 HMG20BQ9P0W2 317 aa21.97■■□□□ 1.11
SDC1-203ENST00000403076 GOLIM4O00461 696 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 CHAF1AQ13111 956 aaPredicted RBP21.96■■□□□ 1.11
SDC1-203ENST00000403076 TDRD7Q8NHU6 1098 aaKnown RBP21.96■■□□□ 1.11
SDC1-203ENST00000403076 VPS33BQ9H267 617 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 PAG1Q9NWQ8 432 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 ARFGEF1Q9Y6D6 1849 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 NFKBIEO00221 500 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 SDSP20132 328 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 GPR162Q16538 588 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 DBNDD1Q9H9R9 158 aa21.96■■□□□ 1.11
SDC1-203ENST00000403076 IL1R1P14778 569 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms