RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 BICDL2A1A5D9 508 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 PLEKHO1Q53GL0 409 aaPredicted RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 JADE2Q9NQC1 790 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 HOMER2Q9NSB8 354 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 DACT1Q9NYF0 836 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 TBC1D2BQ9UPU7 963 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 ABCC2Q92887 1545 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 CIB2O75838 187 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 POLE2P56282 527 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 DNM1Q05193 864 aaKnown RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 TRMT2AQ8IZ69 625 aaKnown RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 TSC22D3Q99576 134 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 NBPF3Q9H094 633 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 BCL2L12Q9HB09 334 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 LARSQ9P2J5 1176 aaKnown RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 ATP2B1P20020 1258 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 DNA2P51530 1060 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 NLRP5P59047 1200 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 SKOR1P84550 965 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 CFAP58Q5T655 872 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 NAA16Q6N069 864 aaPredicted RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 INTS8Q75QN2 995 aaKnown RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 EFCAB13Q8IY85 973 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 ADAMTS12P58397 1594 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 NPHP3Q7Z494 1330 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 TPD52P55327 224 aaPredicted RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 MUM1Q2TAK8 710 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 APBB1IPQ7Z5R6 666 aaPredicted RBP10.87□□□□□ -0.67
SMAD9-203ENST00000399275 STAG1Q8WVM7 1258 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 YY1AP1Q9H869 796 aa10.87□□□□□ -0.67
SMAD9-203ENST00000399275 KDM5CP41229 1560 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 ZBTB7BO15156 539 aaPredicted RBP10.86□□□□□ -0.67
SMAD9-203ENST00000399275 AMOTL1Q8IY63 956 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 C14orf93Q9H972 538 aaKnown RBP10.86□□□□□ -0.67
SMAD9-203ENST00000399275 CCDC69A6NI79 296 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 RASEFQ8IZ41 740 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 EHBP1Q8NDI1 1231 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 SELENOSQ9BQE4 189 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 ECHDC1Q9NTX5 307 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.86□□□□□ -0.67
SMAD9-203ENST00000399275 TTC36A6NLP5 189 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 HIP1RO75146 1068 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 ZFXP17010 805 aaPredicted RBP10.86□□□□□ -0.67
SMAD9-203ENST00000399275 DNAJC25Q9H1X3 360 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 DUOX2Q9NRD8 1548 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 MGEA5O60502 916 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 ATICP31939 592 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 PCYT1AP49585 367 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 HOOK3Q86VS8 718 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 C8orf76Q96K31 380 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 SPG7Q9UQ90 795 aa10.86□□□□□ -0.67
SMAD9-203ENST00000399275 YEATS4O95619 227 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 ZSCAN25Q6NSZ9 544 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 CCDC170Q8IYT3 715 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.85□□□□□ -0.67
SMAD9-203ENST00000399275 PALMDQ9NP74 551 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 GNAT3A8MTJ3 354 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 MCM10Q7L590 875 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 HAUS1Q96CS2 278 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 RMDN2Q96LZ7 410 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 TMEM63CQ9P1W3 806 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 RRS1Q15050 365 aaKnown RBP10.85□□□□□ -0.67
SMAD9-203ENST00000399275 HSP90AA5PQ58FG0 334 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 MFSD4BQ5TF39 518 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 KIAA0556O60303 1618 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 GOLGA6CA6NDK9 693 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 GOLGA6DP0CG33 693 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 TRIM21P19474 475 aaKnown RBP10.85□□□□□ -0.67
SMAD9-203ENST00000399275 EVCP57679 992 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 TTC39AQ5SRH9 613 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 CXorf38Q8TB03 319 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 GOLGA6AQ9NYA3 693 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 PSMD7P51665 324 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 PPP2R3AQ06190 1150 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 PDCD2Q16342 344 aaPredicted RBP10.85□□□□□ -0.67
SMAD9-203ENST00000399275 CEP85Q6P2H3 762 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 SIL1Q9H173 461 aa10.85□□□□□ -0.67
SMAD9-203ENST00000399275 CETN2P41208 172 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 TTC19Q6DKK2 380 aaPredicted RBP10.84□□□□□ -0.67
SMAD9-203ENST00000399275 MMS22LQ6ZRQ5 1243 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 KIAA1524Q8TCG1 905 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 KIF2CQ99661 725 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 F6X3S4 739 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 TXNDC9O14530 226 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 ALDH3A1P30838 453 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 NLRP6P59044 892 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 C16orf71Q8IYS4 520 aaPredicted RBP10.84□□□□□ -0.67
SMAD9-203ENST00000399275 CPLX3Q8WVH0 158 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 OPHN1O60890 802 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 VAMP4O75379 141 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 FERP16591 822 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 LRRC45Q96CN5 670 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 LARP6Q9BRS8 491 aaKnown RBP10.84□□□□□ -0.67
SMAD9-203ENST00000399275 MAGI3Q5TCQ9 1506 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 KDM5DQ9BY66 1539 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 SAMD9Q5K651 1589 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 GIGYF1O75420 1035 aaPredicted RBP10.84□□□□□ -0.67
SMAD9-203ENST00000399275 BRD1O95696 1058 aa10.84□□□□□ -0.67
SMAD9-203ENST00000399275 ELF2Q15723 593 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms