RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RP2O75695 350 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 IGLV3-1P01715 115 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 CD99P14209 185 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 ACHEP22303 614 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 CA6P23280 308 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 GIFP27352 417 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 OR12D2P58182 307 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 RIN1Q13671 783 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 GALEQ14376 348 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 BCL2L15Q5TBC7 163 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 ELMOD2Q8IZ81 293 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 RNF166Q96A37 237 aaPredicted RBP14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 OR2V2Q96R30 315 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 PIMREGQ9BSJ6 248 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 ALG8Q9BVK2 526 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 JAM3Q9BX67 310 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 REG4Q9BYZ8 158 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 SLC22A4Q9H015 551 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 CHODLQ9H9P2 273 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 MED13LQ71F56 2210 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 A0A096LNT2 108 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 RNF223E7ERA6 249 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 RPSAP08865 295 aaKnown RBP14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 TACSTD2P09758 323 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 SLC25A16P16260 332 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 ACKR3P25106 362 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 DCKP27707 260 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 ACTA2P62736 377 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 ACTG2P63267 376 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 CATSPERDQ86XM0 798 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 OR51E1Q8TCB6 317 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 GPR84Q9NQS5 396 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 ZNF275Q9NSD4 429 aaPredicted RBP14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 SLC22A13Q9Y226 551 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 CACNG2Q9Y698 323 aa14.02□□□□□ -0.16
CCDC28A-202ENST00000611852 IRGMA1A4Y4 181 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 F5H5P2 479 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 J3QLW9 94 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 DENRO43583 198 aaKnown RBP14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 XPNPEP2O43895 674 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 LIMS3P0CW19 117 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 LIMS4P0CW20 117 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 ZNF19P17023 458 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 TNFRSF1AP19438 455 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 PSMB10P40306 273 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 NR4A2P43354 598 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 EGFL6Q8IUX8 553 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 SYS1Q8N2H4 156 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 CSNK2A3Q8NEV1 391 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 ITLN1Q8WWA0 313 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 GGHQ92820 318 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 MRPL48Q96GC5 212 aaKnown RBP14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 C18orf12Q96KH6 178 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 COX4I2Q96KJ9 171 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 C4orf36Q96KX1 117 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 MYCBPQ99417 103 aaPredicted RBP14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 ANKRD60Q9BZ19 345 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 BPESC1Q9GZL8 116 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 PLCXD1Q9NUJ7 323 aa14.01□□□□□ -0.17
CCDC28A-202ENST00000611852 ANKRD30BLA7E2S9 258 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 GMDSO60547 372 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 MYF6P23409 242 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 SRP9P49458 86 aaKnown RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 TMEM33P57088 247 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 MAB21L1Q13394 359 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 OR8G1Q15617 311 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 HFEQ30201 348 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 WDR38Q5JTN6 314 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 COMMD2Q86X83 199 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 PRSS35Q8N3Z0 413 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 ZNF540Q8NDQ6 660 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 CCL17Q92583 94 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 DVL3Q92997 716 aaPredicted RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 PELI1Q96FA3 418 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 MEGF10Q96KG7 1140 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 NR1H4Q96RI1 486 aaPredicted RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 ADAT1Q9BUB4 502 aaKnown RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 ISG20L2Q9H9L3 353 aaKnown RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 TREM2Q9NZC2 230 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 DIMT1Q9UNQ2 313 aaKnown RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 NOP16Q9Y3C1 178 aaKnown RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 RHBDD3Q9Y3P4 386 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 A0A1B0GTI1 187 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 PIPP12273 146 aaPredicted RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 ATP6V1B1P15313 513 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 FOSL1P15407 271 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 CD200P41217 278 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 MAP2K3P46734 347 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 C6orf141Q5SZD1 244 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 FDX2Q6P4F2 183 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 KLBQ86Z14 1044 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 FTMTQ8N4E7 242 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 CELF2-AS1Q8N7Q2 184 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 PLPP7Q8NBV4 271 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 BPIFB6Q8NFQ5 453 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 OR2G2Q8NGZ5 317 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 ITFG2Q969R8 447 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 TMEM80Q96HE8 168 aa14□□□□□ -0.17
CCDC28A-202ENST00000611852 FAM71F1Q96KD3 344 aaPredicted RBP14□□□□□ -0.17
CCDC28A-202ENST00000611852 CNOT2Q9NZN8 540 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms