RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 FCGR1AP12314 374 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 SLC2A5P22732 501 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 ESRRGP62508 458 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 PTGES3Q15185 160 aaKnown RBP12.78□□□□□ -0.36
TRIM28-203ENST00000593582 SNCBQ16143 134 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 DCDC5Q6ZRR9 648 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 USP43Q70EL4 1123 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 ZDHHC13Q8IUH4 622 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 FTMTQ8N4E7 242 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 OR8B3Q8NGG8 313 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 OR8S1Q8NH09 359 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 NEIL1Q96FI4 390 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-203ENST00000593582 OR8B2Q96RD0 313 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 MRI1Q9BV20 369 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 NIPAL2Q9H841 368 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 INSIG2Q9Y5U4 225 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 AUP1Q9Y679 476 aa12.78□□□□□ -0.36
TRIM28-203ENST00000593582 hCG_38984A0A1B0GV85 526 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 A6NLC8 198 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 CIB2O75838 187 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 RGS9O75916 674 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF12P17014 697 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 FPR2P25090 351 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 PITPNBP48739 271 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 GSK3AP49840 483 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 ARMCX4Q5H9R4 360 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 LCN1P1Q5VSP4 162 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 KCTD18Q6PI47 426 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-203ENST00000593582 BTNL3Q6UXE8 466 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 LRRN1Q6UXK5 716 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 BPIFB2Q8N4F0 458 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 CSNK2A3Q8NEV1 391 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 ZFAND2BQ8WV99 257 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 JMJD8Q96S16 334 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 TEAD3Q99594 435 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 SUCNR1Q9BXA5 334 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 YIPF3Q9GZM5 350 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 TRIM36Q9NQ86 728 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 C1orf123Q9NWV4 160 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF319Q9P2F9 582 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 CLN8Q9UBY8 286 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 ENOPH1Q9UHY7 261 aa12.77□□□□□ -0.37
TRIM28-203ENST00000593582 WNK2Q9Y3S1 2297 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 hCG_1807616A0A1W2PRN6 198 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 VENTXO95231 258 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 ALOX5APP20292 161 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 GNALP38405 381 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 PSMA6P60900 246 aaKnown RBP12.76□□□□□ -0.37
TRIM28-203ENST00000593582 OR8B8Q15620 311 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 SFRP4Q6FHJ7 346 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-203ENST00000593582 KRT77Q7Z794 578 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 BOLLQ8N9W6 283 aaKnown RBP12.76□□□□□ -0.37
TRIM28-203ENST00000593582 C19orf18Q8NEA5 215 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 DUS3LQ96G46 650 aaKnown RBP12.76□□□□□ -0.37
TRIM28-203ENST00000593582 PAPOLGQ9BWT3 736 aaKnown RBP12.76□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF391Q9UJN7 358 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 KLHDC2Q9Y2U9 406 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 LRP12Q9Y561 859 aa12.76□□□□□ -0.37
TRIM28-203ENST00000593582 TRAV38-1A0A0B4J264 116 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 IGHV2-70DA0A0C4DH43 119 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 C3orf80F5H4A9 247 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 LGALS8O00214 317 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 PHYHO14832 338 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 PRKYO43930 277 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 MITFO75030 526 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-203ENST00000593582 FSHBP01225 129 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 MRPL3P09001 348 aaKnown RBP12.75□□□□□ -0.37
TRIM28-203ENST00000593582 HCCSP53701 268 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 HILS1P60008 231 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 PAX8Q06710 450 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 KDM4DQ6B0I6 523 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 DEGS2Q6QHC5 323 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 AMIGO2Q86SJ2 522 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 SEMA6DQ8NFY4 1073 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 RAB40AQ8WXH6 277 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 LRTOMTQ8WZ04 291 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 SLC6A7Q99884 636 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 MROQ9BYG7 248 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 GABARAPL1Q9H0R8 117 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 H2AFY2Q9P0M6 372 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-203ENST00000593582 RHBDD3Q9Y3P4 386 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 TMEM14AQ9Y6G1 99 aa12.75□□□□□ -0.37
TRIM28-203ENST00000593582 ARHGAP32A7KAX9 2087 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 CCDC182A6NF36 153 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 OOEPA6NGQ2 149 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 ANXA2P2A6NMY6 339 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 ZAR1LA6NP61 321 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 NDUFA2O43678 99 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 EPHA2P29317 976 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 CD80P33681 288 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 PSMB10P40306 273 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 NPY4RP50391 375 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 HOXA4Q00056 320 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-203ENST00000593582 IL5RAQ01344 420 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 PAX2Q02962 417 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 SLX4IPQ5VYV7 408 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 LYPD2Q6UXB3 125 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF826PQ6ZT77 177 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 TCEANCQ8N8B7 351 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 ASB17Q8WXJ9 295 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms