RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PRKACGP22612 351 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 NPY4RP50391 375 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 BPIFB3P59826 476 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 FAM3AP98173 230 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 GINS1Q14691 196 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 OR8B8Q15620 311 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 FAM57BQ71RH2 274 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 PRSS45Q7RTY3 260 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 RNF133Q8WVZ7 376 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 RASSF4Q9H2L5 321 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 PRDM13Q9H4Q3 707 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 ZNF696Q9H7X3 374 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 MARCH7Q9H992 704 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 BRD7Q9NPI1 651 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 ZNF319Q9P2F9 582 aa17.02■□□□□ 0.32
SHMT1-209ENST00000582653 TRAV40A0A0B4J280 105 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 ARRDC5A6NEK1 342 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 A6NLC8 198 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 AQP12BA6NM10 295 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 C22orf46C9J442 243 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 LGALS8O00214 317 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 ZNF121P58317 390 aaPredicted RBP17.01■□□□□ 0.31
SHMT1-209ENST00000582653 POU4F2Q12837 409 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 GK3PQ14409 553 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 KCNJ8Q15842 424 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 TIGD6Q17RP2 521 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 PRR31Q5SQ13 230 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 PLBD1Q6P4A8 553 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 AQP12AQ8IXF9 295 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 TIGD4Q8IY51 512 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 REEP6Q96HR9 211 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 TECTBQ96PL2 329 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 TOR3AQ9H497 397 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 OPA3Q9H6K4 179 aa17.01■□□□□ 0.31
SHMT1-209ENST00000582653 DOCK11Q5JSL3 2073 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17■□□□□ 0.31
SHMT1-209ENST00000582653 MDFIC2A0A1B0GVS7 189 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 ANKRD30BLA7E2S9 258 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 TNFRSF13BO14836 293 aaPredicted RBP17■□□□□ 0.31
SHMT1-209ENST00000582653 LIPFP07098 398 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 DDOSTP39656 456 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 FGF12P61328 243 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 IL13RA1P78552 427 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 GFOD2Q3B7J2 385 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 CD276Q5ZPR3 534 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 C16orf87Q6PH81 154 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 SHFQ7M4L6 423 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 WDR86Q86TI4 376 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 GCSAMQ8N6F7 178 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 SPERTQ8NA61 448 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 OR8S1Q8NH09 359 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 UNKLQ9H9P5 680 aaKnown RBP17■□□□□ 0.31
SHMT1-209ENST00000582653 SMURF1Q9HCE7 757 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 C14orf119Q9NWQ9 140 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 ERVK-18Q9QC07 812 aa17■□□□□ 0.31
SHMT1-209ENST00000582653 TRRAPQ9Y4A5 3859 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 IGHV3OR15-7A0A075B7D8 119 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 hCG_1807616A0A1W2PRN6 198 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 OOEPA6NGQ2 149 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 PRR23D1E9PI22 279 aaPredicted RBP16.99■□□□□ 0.31
SHMT1-209ENST00000582653 ADAM20O43506 726 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 NDUFA2O43678 99 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 SELENOFO60613 162 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 E2F6O75461 281 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 GYPAP02724 150 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 H2BFMP0C1H6 154 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 PRR23D2P0DMB1 279 aaPredicted RBP16.99■□□□□ 0.31
SHMT1-209ENST00000582653 PAICSP22234 425 aaKnown RBP16.99■□□□□ 0.31
SHMT1-209ENST00000582653 OPRL1P41146 370 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 KLHL12Q53G59 568 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 TMEM236Q5W0B7 351 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 BRD3OSQ6XYD6 125 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 TRPM8Q7Z2W7 1104 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 SPATA24Q86W54 205 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 C11orf53Q8IXP5 236 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 THEM6Q8WUY1 208 aa16.99■□□□□ 0.31
SHMT1-209ENST00000582653 TAF15Q92804 592 aaKnown RBP eCLIP16.99■□□□□ 0.31
SHMT1-209ENST00000582653 TRAV38-1A0A0B4J264 116 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 hCG_38984A0A1B0GV85 526 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 GYG2O15488 501 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 ENSAO43768 121 aaKnown RBP16.98■□□□□ 0.31
SHMT1-209ENST00000582653 FCN3O75636 299 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 LHBP01229 141 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 OSMP13725 252 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 GSK3AP49840 483 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 ELF3P78545 371 aaPredicted RBP16.98■□□□□ 0.31
SHMT1-209ENST00000582653 CDK5Q00535 292 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 CPOQ8IVL8 374 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 BBS1Q8NFJ9 593 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 PGAM5Q96HS1 289 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 TRIM36Q9NQ86 728 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 KLHDC2Q9Y2U9 406 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 RHBDD3Q9Y3P4 386 aa16.98■□□□□ 0.31
SHMT1-209ENST00000582653 WIPF1O43516 503 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 APOC1P02654 83 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 LYNP07948 512 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 SFTPBP07988 381 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 NAA10P41227 235 aaPredicted RBP16.97■□□□□ 0.31
SHMT1-209ENST00000582653 CSNK2BP67870 215 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 CBX1P83916 185 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms