RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 OPA3Q9H6K4 179 aa7.31□□□□□ -1.24
NUP88-211ENST00000575976 MSL2Q9HCI7 577 aa7.31□□□□□ -1.24
NUP88-211ENST00000575976 DYNLRB1Q9NP97 96 aa7.31□□□□□ -1.24
NUP88-211ENST00000575976 LRCH1Q9Y2L9 728 aa7.31□□□□□ -1.24
NUP88-211ENST00000575976 SIRT4Q9Y6E7 314 aaPredicted RBP7.31□□□□□ -1.24
NUP88-211ENST00000575976 PMF1-BGLAPU3KQ54 211 aa7.31□□□□□ -1.24
NUP88-211ENST00000575976 NIPBLQ6KC79 2804 aaeCLIP7.31□□□□□ -1.24
NUP88-211ENST00000575976 AKAP9Q99996 3911 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 TRBV2A0A0J9YWF9 115 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 PLSCR5A0PG75 271 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 ZSCAN5BA6NJL1 495 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 OR4C45A6NMZ5 311 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 OGG1O15527 345 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 SPRY3O43610 288 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 MRPS14O60783 128 aaKnown RBP7.3□□□□□ -1.24
NUP88-211ENST00000575976 NDUFS7O75251 213 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 BMP4P12644 408 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 ACKR3P25106 362 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 DDOSTP39656 456 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 PPOXP50336 477 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 ZNF81P51508 661 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 CCR9P51686 369 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 CDK5R1Q15078 307 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 SPHARQ15513 63 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 TMEM244Q5VVB8 128 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 RPL22L1Q6P5R6 122 aaKnown RBP7.3□□□□□ -1.24
NUP88-211ENST00000575976 Q6ZR03 302 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 Q6ZSR3 168 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 DOK3Q7L591 496 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 CDH24Q86UP0 819 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 ZFP41Q8N8Y5 198 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 PLPP7Q8NBV4 271 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 OR14K1Q8NGZ2 314 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 RPS4Y2Q8TD47 263 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 HAVCR2Q8TDQ0 301 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 PDCD1LG2Q9BQ51 273 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 SLC30A2Q9BRI3 323 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 MND1Q9BWT6 205 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 MS4A5Q9H3V2 200 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 CXorf56Q9H5V9 222 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 CYSLTR2Q9NS75 346 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 ZNF701Q9NV72 531 aaPredicted RBP7.3□□□□□ -1.24
NUP88-211ENST00000575976 GPR160Q9UJ42 338 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 ZNF391Q9UJN7 358 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 FBXO9Q9UK97 447 aaPredicted RBP7.3□□□□□ -1.24
NUP88-211ENST00000575976 EDARQ9UNE0 448 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 LSM2Q9Y333 95 aaKnown RBP7.3□□□□□ -1.24
NUP88-211ENST00000575976 V9GYS6 101 aa7.3□□□□□ -1.24
NUP88-211ENST00000575976 DSCAMO60469 2012 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 A0A1B0GVI7 797 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 LOC107986453A0A1B0GWG9 222 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 LOC390937A0A1W2PQ73 354 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 TRIM64A6NGJ6 449 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 C17orf100A8MU93 164 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 H0YL77 283 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 H7C417 338 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 SYT7O43581 403 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 LMX1BO60663 402 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 MTRF1O75570 445 aaKnown RBP7.29□□□□□ -1.24
NUP88-211ENST00000575976 DHRS3O75911 302 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 ZFPL1O95159 310 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 IGHV1-46P01743 117 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 ISG15P05161 165 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 UBCP0CG48 685 aaKnown RBP7.29□□□□□ -1.24
NUP88-211ENST00000575976 ATP6V1B1P15313 513 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 CCL1P22362 96 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 LIPAP38571 399 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 MAGEB1P43366 347 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 MAP2K3P46734 347 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 PTH2RP49190 550 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 CHN2P52757 468 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 EMX1Q04741 257 aaPredicted RBP7.29□□□□□ -1.24
NUP88-211ENST00000575976 SLC3A1Q07837 685 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 ACSM1Q08AH1 577 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 MED22Q15528 200 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 OR8B8Q15620 311 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 TSTQ16762 297 aaKnown RBP7.29□□□□□ -1.24
NUP88-211ENST00000575976 DEFB113Q30KQ7 82 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 KCTD21Q4G0X4 260 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 CCDC58Q4VC31 144 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 DMKNQ6E0U4 476 aaPredicted RBP7.29□□□□□ -1.24
NUP88-211ENST00000575976 SPARTQ8N0X7 666 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 ZNF676Q8N7Q3 588 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 SEMA6DQ8NFY4 1073 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 OR10AC1Q8NH08 325 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 OR5AK2Q8NH90 309 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 NINJ1Q92982 152 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 MBD6Q96DN6 1003 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 TRMT61AQ96FX7 289 aaKnown RBP7.29□□□□□ -1.24
NUP88-211ENST00000575976 SORCS2Q96PQ0 1159 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 PPP1R3EQ9H7J1 279 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 ACOT13Q9NPJ3 140 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 TRIM36Q9NQ86 728 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 TMEM100Q9NV29 134 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 CGGBP1Q9UFW8 167 aaPredicted RBP7.29□□□□□ -1.24
NUP88-211ENST00000575976 RHBDD3Q9Y3P4 386 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 ROS1P08922 2347 aa7.29□□□□□ -1.24
NUP88-211ENST00000575976 PNMA8CA0A1B0GUJ8 204 aa7.28□□□□□ -1.24
NUP88-211ENST00000575976 A6NIN4 97 aa7.28□□□□□ -1.24
NUP88-211ENST00000575976 TMEM212A6NML5 194 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms