RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR52H1Q8NGJ2 320 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 OR8S1Q8NH09 359 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 PGAM5Q96HS1 289 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 CADM1Q9BY67 442 aaKnown RBP17.32■□□□□ 0.36
CLN3-219ENST00000565778 OR10A2Q9H208 303 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 NTN4Q9HB63 628 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 SELENOFO60613 162 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 PTBP3O95758 552 aaKnown RBP17.31■□□□□ 0.36
CLN3-219ENST00000565778 CFL1P23528 166 aaKnown RBP17.31■□□□□ 0.36
CLN3-219ENST00000565778 OPRL1P41146 370 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 HOXA4Q00056 320 aaPredicted RBP17.31■□□□□ 0.36
CLN3-219ENST00000565778 OR8B8Q15620 311 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 ZNF454Q8N9F8 522 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 OTOSQ8NHW6 89 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 FAM216AQ8WUB2 273 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 NRBF2Q96F24 287 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 MMADHCQ9H3L0 296 aaPredicted RBP17.31■□□□□ 0.36
CLN3-219ENST00000565778 TVP23BQ9NYZ1 205 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 KIF17Q9P2E2 1029 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 ZNF69Q9UC07 566 aa17.31■□□□□ 0.36
CLN3-219ENST00000565778 IGHV2-70DA0A0C4DH43 119 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 KIR2DS1A0A191URI9 304 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 hCG_1807616A0A1W2PRN6 198 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 C3orf80F5H4A9 247 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 LGALS8O00214 317 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 PRODHO43272 600 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 TIPRLO75663 272 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 NAA10P41227 235 aaPredicted RBP17.3■□□□□ 0.36
CLN3-219ENST00000565778 GSK3AP49840 483 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 PAX2Q02962 417 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 BNIP1Q12981 228 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 SNAPC1Q16533 368 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 KLF17Q5JT82 389 aaPredicted RBP17.3■□□□□ 0.36
CLN3-219ENST00000565778 SLC35D3Q5M8T2 416 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 WDR25Q64LD2 544 aaPredicted RBP17.3■□□□□ 0.36
CLN3-219ENST00000565778 ZNF826PQ6ZT77 177 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 PRSS45Q7RTY3 260 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 GCDHQ92947 438 aaPredicted RBP17.3■□□□□ 0.36
CLN3-219ENST00000565778 MS4A7Q9GZW8 240 aaPredicted RBP17.3■□□□□ 0.36
CLN3-219ENST00000565778 PAPOLBQ9NRJ5 636 aaKnown RBP17.3■□□□□ 0.36
CLN3-219ENST00000565778 ZNF319Q9P2F9 582 aa17.3■□□□□ 0.36
CLN3-219ENST00000565778 RASSF2P50749 326 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 CRISP1P54107 249 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 ZNF841Q6ZN19 808 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 SIGLECL1Q8N7X8 197 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 BBS1Q8NFJ9 593 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 DNAJC9Q8WXX5 260 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 TECTBQ96PL2 329 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 NUDT16L1Q9BRJ7 211 aaKnown RBP17.29■□□□□ 0.36
CLN3-219ENST00000565778 SLC25A19Q9HC21 320 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 TRIM36Q9NQ86 728 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 ERVK-18Q9QC07 812 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 LAMP5Q9UJQ1 280 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 FBN3Q75N90 2809 aa17.29■□□□□ 0.36
CLN3-219ENST00000565778 TRAV38-1A0A0B4J264 116 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 ADAM20O43506 726 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 NDUFA2O43678 99 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 GNALP38405 381 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 PSMB10P40306 273 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 DAPP51397 102 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 HCCSP53701 268 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 APOFQ13790 326 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 KRT77Q7Z794 578 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 BCL6BQ8N143 479 aaPredicted RBP17.28■□□□□ 0.36
CLN3-219ENST00000565778 ZDHHC22Q8N966 263 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 CSNK2A3Q8NEV1 391 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 OR5K1Q8NHB7 308 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 ESM1Q9NQ30 184 aa17.28■□□□□ 0.36
CLN3-219ENST00000565778 IGHV3OR16-10A0A075B7F0 116 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 hCG_38984A0A1B0GV85 526 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 OOEPA6NGQ2 149 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 PHYHO14832 338 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 PPIAL4GP0DN37 164 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 NPY4RP50391 375 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 POU4F2Q12837 409 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 GCSAMQ8N6F7 178 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 UTP4Q969X6 686 aaKnown RBP17.27■□□□□ 0.36
CLN3-219ENST00000565778 TEAD3Q99594 435 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 PAPOLGQ9BWT3 736 aaKnown RBP17.27■□□□□ 0.36
CLN3-219ENST00000565778 RASSF4Q9H2L5 321 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 RGCCQ9H4X1 137 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 PPP1R3EQ9H7J1 279 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 RHBDD3Q9Y3P4 386 aa17.27■□□□□ 0.36
CLN3-219ENST00000565778 GYPAP02724 150 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 ALOX5APP20292 161 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 SLC2A5P22732 501 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 PTGES3Q15185 160 aaKnown RBP17.26■□□□□ 0.35
CLN3-219ENST00000565778 SNCBQ16143 134 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 CD276Q5ZPR3 534 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 FAHD1Q6P587 224 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 PARP8Q8N3A8 854 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 FTMTQ8N4E7 242 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 OR1M1Q8NGA1 313 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 UPRTQ96BW1 309 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 YIPF3Q9GZM5 350 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 NIPAL2Q9H841 368 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 KLHDC2Q9Y2U9 406 aa17.26■□□□□ 0.35
CLN3-219ENST00000565778 TMEM89A2RUT3 159 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 ANXA2P2A6NMY6 339 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 G3V2T6 193 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms