RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 RPS2P15880 293 aaKnown RBP15.36■□□□□ 0.05
CLN3-214ENST00000565140 FASP25445 335 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 DDOSTP39656 456 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 GSK3AP49840 483 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 ESRRGP62508 458 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 PAX2Q02962 417 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 ZNF154Q13106 437 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 GFOD2Q3B7J2 385 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 KDM4DQ6B0I6 523 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 LRRN1Q6UXK5 716 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 ZNF826PQ6ZT77 177 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 BCDIN3DQ7Z5W3 292 aaKnown RBP15.36■□□□□ 0.05
CLN3-214ENST00000565140 TEX29Q8N6K0 151 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 PGAM5Q96HS1 289 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 SSBP3Q9BWW4 388 aaPredicted RBP15.36■□□□□ 0.05
CLN3-214ENST00000565140 OR10A2Q9H208 303 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 FN3KRPQ9HA64 309 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 KRT84Q9NSB2 600 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 RNF7Q9UBF6 113 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 LRCH1Q9Y2L9 728 aa15.36■□□□□ 0.05
CLN3-214ENST00000565140 ANKRD30BLA7E2S9 258 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 EFNB1P98172 346 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 SFRP4Q6FHJ7 346 aaPredicted RBP15.35■□□□□ 0.05
CLN3-214ENST00000565140 WDR86Q86TI4 376 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 BOLLQ8N9W6 283 aaKnown RBP15.35■□□□□ 0.05
CLN3-214ENST00000565140 SPERTQ8NA61 448 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 PLPP7Q8NBV4 271 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 SEMA6DQ8NFY4 1073 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 NEIL1Q96FI4 390 aaPredicted RBP15.35■□□□□ 0.05
CLN3-214ENST00000565140 GABARAPL1Q9H0R8 117 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 C1orf123Q9NWV4 160 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 LAMP5Q9UJQ1 280 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 RHBDD3Q9Y3P4 386 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 LRP12Q9Y561 859 aa15.35■□□□□ 0.05
CLN3-214ENST00000565140 A0A0A6YYJ9 748 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 ZAR1LA6NP61 321 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 PRR32B1ATL7 298 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 PSMD9O00233 223 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 MRPL3P09001 348 aaKnown RBP15.34■□□□□ 0.05
CLN3-214ENST00000565140 CPT2P23786 658 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 CD80P33681 288 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 SCGB2A2Q13296 93 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 ZNF841Q6ZN19 808 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 DCDC5Q6ZRR9 648 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 ASRGL1Q7L266 308 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 ZDHHC13Q8IUH4 622 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 C11orf53Q8IXP5 236 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 LYZL4Q96KX0 146 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 YIPF3Q9GZM5 350 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 SEMA6AQ9H2E6 1030 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 OR5V1Q9UGF6 321 aa15.34■□□□□ 0.05
CLN3-214ENST00000565140 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.33■□□□□ 0.04
CLN3-214ENST00000565140 CFL1P23528 166 aaKnown RBP15.33■□□□□ 0.04
CLN3-214ENST00000565140 ACKR3P25106 362 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 PSMB10P40306 273 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 PITPNBP48739 271 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 GNB2P62879 340 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 PAX8Q06710 450 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 OR8B8Q15620 311 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 KLF17Q5JT82 389 aaPredicted RBP15.33■□□□□ 0.04
CLN3-214ENST00000565140 SLX4IPQ5VYV7 408 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 C12orf73Q69YU5 71 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 KRT77Q7Z794 578 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 TCEANCQ8N8B7 351 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 OR8B12Q8NGG6 310 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 OR8B3Q8NGG8 313 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 OR8S1Q8NH09 359 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 C22orf15Q8WYQ4 148 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 DACT3Q96B18 629 aaPredicted RBP15.33■□□□□ 0.04
CLN3-214ENST00000565140 OR8B2Q96RD0 313 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 SLC6A7Q99884 636 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 C14orf119Q9NWQ9 140 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 COPS3Q9UNS2 423 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 AUP1Q9Y679 476 aa15.33■□□□□ 0.04
CLN3-214ENST00000565140 A6NLC8 198 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 C3orf80F5H4A9 247 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 LGALS8O00214 317 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 TNFRSF13BO14836 293 aaPredicted RBP15.32■□□□□ 0.04
CLN3-214ENST00000565140 LHBP01229 141 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 POLR2IP36954 125 aaKnown RBP15.32■□□□□ 0.04
CLN3-214ENST00000565140 PSMA6P60900 246 aaKnown RBP15.32■□□□□ 0.04
CLN3-214ENST00000565140 AADACL4Q5VUY2 407 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 WDR25Q64LD2 544 aaPredicted RBP15.32■□□□□ 0.04
CLN3-214ENST00000565140 MEPCEQ7L2J0 689 aaKnown RBP15.32■□□□□ 0.04
CLN3-214ENST00000565140 GCSAMQ8N6F7 178 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 ZNF418Q8TF45 676 aaPredicted RBP15.32■□□□□ 0.04
CLN3-214ENST00000565140 CIB1Q99828 191 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 TTTY10Q9BZA0 68 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 RGCCQ9H4X1 137 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 NIPAL2Q9H841 368 aa15.32■□□□□ 0.04
CLN3-214ENST00000565140 CIB2O75838 187 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 FCGR1AP12314 374 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 EGR1P18146 543 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 HILS1P60008 231 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 MZT1Q08AG7 82 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 POU4F2Q12837 409 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 LCN1P1Q5VSP4 162 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 DEGS2Q6QHC5 323 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 USP43Q70EL4 1123 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 NLRC3Q7RTR2 1065 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms