RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CDS2O95674 445 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 RAB36O95755 333 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 HLA-DQA2P01906 255 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 HOXB5P09067 269 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 SNRPCP09234 159 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 PRSS56P0CW18 603 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 SLC2A2P11168 524 aaPredicted RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 CD79AP11912 226 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 CRHBPP24387 322 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 RPL4P36578 427 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 MDH2P40926 338 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 TNFRSF4P43489 277 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 XCR1P46094 333 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FUT6P51993 359 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 GEMP55040 296 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 ARPP19P56211 112 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 ERVFC1-1P60608 527 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 EIF5AP63241 154 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 DCDP81605 110 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 MXD1Q05195 221 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 KLRC3Q07444 240 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 GPR50Q13585 617 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 HTR4Q13639 388 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 CEACAM7Q14002 265 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 RHEBQ15382 184 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 LTC4SQ16873 150 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 TMEM241Q24JQ0 296 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 MS4A18Q3C1V0 323 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 PLK5Q496M5 336 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 ENTPD8Q5MY95 495 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FAM74A1Q5RGS3 127 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 TMEM69Q5SWH9 247 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 CST9Q5W186 159 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 C22orf42Q6IC83 251 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 OR4A47Q6IF82 309 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 EIF5AL1Q6IS14 154 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 PWWP2BQ6NUJ5 590 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 RGMBQ6NW40 437 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 TOMM20LQ6UXN7 152 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FRRS1Q6ZNA5 592 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FA2HQ7L5A8 372 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 OR2W3Q7Z3T1 314 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 NRARPQ7Z6K4 114 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 GPSM1Q86YR5 675 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 SLC30A8Q8IWU4 369 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FBXL14Q8N1E6 418 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 NOXO1Q8NFA2 376 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 OR4D11Q8NGI4 311 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 OR1L6Q8NGR2 347 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 OR2G2Q8NGZ5 317 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 OR56B4Q8NH76 319 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 OR14L1PQ8NHC6 308 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 RHOXF1Q8NHV9 184 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 HAVCR2Q8TDQ0 301 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 CANT1Q8WVQ1 401 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FAM3CQ92520 227 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 GGHQ92820 318 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 GALMQ96C23 342 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 SMIM19Q96E16 107 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 PIK3IP1Q96FE7 263 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 WBP1Q96G27 269 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 TP53RKQ96S44 253 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 RASL10BQ96S79 203 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 H2AFJQ9BTM1 129 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 PECRQ9BY49 303 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 TMEM39BQ9GZU3 492 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FAM49AQ9H0Q0 323 aaPredicted RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 PNRC2Q9NPJ4 139 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 FBXO6Q9NRD1 293 aaPredicted RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 TMEM38BQ9NVV0 291 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 PCYOX1Q9UHG3 505 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 PLA2R1Q13018 1463 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 A0A1B0GUL6 1792 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 IGHV2-70DA0A0C4DH43 119 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 A0A1W2PPE3 182 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 C15orf65H3BRN8 121 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 SLC1A7O00341 560 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 PLPP3O14495 311 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CCL25O15444 150 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 GNG7O60262 68 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 EDF1O60869 148 aaKnown RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 HAND1O96004 215 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 HLA-HP01893 362 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 SHBGP04278 402 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ALDOBP05062 364 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 FABP3P05413 133 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 KLK1P06870 262 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CHRM4P08173 479 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 MPC1LP0DKB6 136 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 IRF1P10914 325 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TDGF1P13385 188 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ZNF14P17017 642 aaPredicted RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 IL1RNP18510 177 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 HRH2P25021 359 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CD1CP29017 333 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ADORA2BP29275 332 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CMPK1P30085 196 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 BRS3P32247 399 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CDAP32320 146 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 APLNRP35414 380 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms