RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NMNAT2Q9BZQ4 307 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 DNTTIP1Q9H147 329 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 IL20Q9NYY1 176 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 ADA2Q9NZK5 511 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 CAB39Q9Y376 341 aaPredicted RBP13.48□□□□□ -0.25
CLN3-208ENST00000561505 A0A1B0GW55 424 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 CCDC22O60826 627 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 TIPRLO75663 272 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 HLA-DQA2P01906 255 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 GRPP07492 148 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4L2P0CJ85 424 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4L3P0CJ86 424 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4L4P0CJ87 422 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4L5P0CJ88 424 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4L6P0CJ89 424 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4L7P0CJ90 424 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 ZNF823P16415 610 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 GRK5P34947 590 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 RPS27P42677 84 aaKnown RBP13.47□□□□□ -0.25
CLN3-208ENST00000561505 PSME3P61289 254 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 FAM3AP98173 230 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 GUCA2AQ02747 115 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 KRT72Q14CN4 511 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 MICBQ29980 383 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 C2orf68Q2NKX9 166 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 BEAN1Q3B7T3 259 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 WDR38Q5JTN6 314 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4L9Q6RFH8 374 aaPredicted RBP13.47□□□□□ -0.25
CLN3-208ENST00000561505 GALNT4Q8N4A0 578 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 SCCPDHQ8NBX0 429 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 OR1M1Q8NGA1 313 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 OR4C15Q8NGM1 316 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 OR2T4Q8NH00 348 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DCTN5Q9BTE1 182 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 DUX4Q9UBX2 424 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 COMMD3-BMI1R4GMX3 469 aa13.47□□□□□ -0.25
CLN3-208ENST00000561505 ZNF816-ZNF321PA0A0X1KG74 233 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 PYCR1P32322 319 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 IFNGR2P38484 337 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 ELF3P78545 371 aaPredicted RBP13.46□□□□□ -0.25
CLN3-208ENST00000561505 POU4F2Q12837 409 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 FAM76BQ5HYJ3 339 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 SLC35F1Q5T1Q4 408 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 STUMQ69YW2 141 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 RPL13AP3Q6NVV1 102 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 PGBD2Q6P3X8 592 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 LYPD4Q6UWN0 246 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 SLC36A1Q7Z2H8 476 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 DCXRQ7Z4W1 244 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 CYB561A3Q8NBI2 242 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 OR5R1Q8NH85 324 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 GNPDA2Q8TDQ7 276 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 ST8SIA4Q92187 359 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 SGK3Q96BR1 496 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 CCL13Q99616 98 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 MYLK2Q9H1R3 596 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 FAM96BQ9Y3D0 163 aa13.46□□□□□ -0.25
CLN3-208ENST00000561505 IGHV3OR15-7A0A075B7D8 119 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 TVP23AA6NH52 213 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 NUDT2P50583 147 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 PRKXP51817 358 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 KLHL12Q53G59 568 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 DHRS7BQ6IAN0 325 aaPredicted RBP13.45□□□□□ -0.26
CLN3-208ENST00000561505 SLC35E4Q6ICL7 350 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 CRIP3Q6Q6R5 217 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 KRT74Q7RTS7 529 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 SLC16A9Q7RTY1 509 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 CMTM4Q8IZR5 234 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 OR10Z1Q8NGY1 313 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 LRRC29Q8WV35 223 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 CFHR4Q92496 578 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 SLAMF6Q96DU3 332 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 AJUBAQ96IF1 538 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 SEMA6AQ9H2E6 1030 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 SPAG4Q9NPE6 437 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 IL1RAPQ9NPH3 570 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 CDH10Q9Y6N8 788 aa13.45□□□□□ -0.26
CLN3-208ENST00000561505 hCG_38984A0A1B0GV85 526 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 A6NLC8 198 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 ANKRD30BLA7E2S9 258 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 ZNF878C9JN71 531 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 ACOT8O14734 319 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 NPFFO15130 113 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 HSD17B1P14061 328 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 NAA10P41227 235 aaPredicted RBP13.44□□□□□ -0.26
CLN3-208ENST00000561505 KIR2DS4P43632 304 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 ENTPD1P49961 510 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 UBE2E1P51965 193 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 SLC25A1P53007 311 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 SPIBQ01892 262 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 ACSM1Q08AH1 577 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 SAMD5Q5TGI4 173 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 ZNF770Q6IQ21 691 aaPredicted RBP13.44□□□□□ -0.26
CLN3-208ENST00000561505 ZNF788Q6ZQV5 615 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 DPY19L4Q7Z388 723 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 C1QL4Q86Z23 238 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 PDZD9Q8IXQ8 264 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 LNX2Q8N448 690 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 FAM216BQ8N7L0 139 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 SLC37A3Q8NCC5 494 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms