RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 C14orf119Q9NWQ9 140 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 RNF7Q9UBF6 113 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 INSIG2Q9Y5U4 225 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 CCDC182A6NF36 153 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 ZAR1LA6NP61 321 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 ANKRD30BLA7E2S9 258 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 PHYHO14832 338 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 RPS2P15880 293 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 PSMB10P40306 273 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 SEC61A1P61619 476 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 ROM1Q03395 351 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 ZNF154Q13106 437 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 APOFQ13790 326 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 MPPED2Q15777 294 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 KCNJ8Q15842 424 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 SNAPC1Q16533 368 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 SLX4IPQ5VYV7 408 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 SPATC1Q76KD6 591 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 NLRC3Q7RTR2 1065 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 ZNF418Q8TF45 676 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 TEAD3Q99594 435 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 KRT84Q9NSB2 600 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 TVP23BQ9NYZ1 205 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 OR5V1Q9UGF6 321 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 TMEM14AQ9Y6G1 99 aa13.42□□□□□ -0.26
CCDC88C-209ENST00000554872 TRAPPC2LH3BP13 241 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 TBX1O43435 398 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 NDUFA2O43678 99 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 CFHR2P36980 270 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 RBMXP38159 391 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 GSK3AP49840 483 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 HILS1P60008 231 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 PAX8Q06710 450 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 C11orf91Q3C1V1 193 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 PRAMEF6Q5VXH4 476 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 C12orf73Q69YU5 71 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 KCTD18Q6PI47 426 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 FAM57BQ71RH2 274 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 OR8B3Q8NGG8 313 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 THEM6Q8WUY1 208 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 ASB17Q8WXJ9 295 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 OR8B2Q96RD0 313 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 MNTQ99583 582 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 TLNRD1Q9H1K6 362 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 RNPEPL1Q9HAU8 725 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 MMP26Q9NRE1 261 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 HAO2Q9NYQ3 351 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 ZNF319Q9P2F9 582 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 LAMP5Q9UJQ1 280 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 KLHDC2Q9Y2U9 406 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 FBN3Q75N90 2809 aa13.41□□□□□ -0.26
CCDC88C-209ENST00000554872 A0A0U1RQV5 110 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 SLC22A31A6NKX4 558 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 LGALS8O00214 317 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 TNFRSF13BO14836 293 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 PRKYO43930 277 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 ZNF254O75437 659 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 LHBP01229 141 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 NAA10P41227 235 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 PITPNBP48739 271 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 NPY4RP50391 375 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 RPS7P62081 194 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 AADACL4Q5VUY2 407 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 NXNL2Q5VZ03 156 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 LRRN1Q6UXK5 716 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 DVL3Q92997 716 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 CENPNQ96H22 339 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 PGAM5Q96HS1 289 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 JMJD8Q96S16 334 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 MRI1Q9BV20 369 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 SUCNR1Q9BXA5 334 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 DNAJC27Q9NZQ0 273 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 LRP12Q9Y561 859 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 MPC1Q9Y5U8 109 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 AUP1Q9Y679 476 aa13.4□□□□□ -0.26
CCDC88C-209ENST00000554872 IGHV2-70DA0A0C4DH43 119 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 IGHV3-64DA0A0J9YX35 117 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 CIB2O75838 187 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 CST4P01036 141 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 GNB2P62879 340 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 IL5RAQ01344 420 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 TEX36Q5VZQ5 186 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF841Q6ZN19 808 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF771Q7L3S4 317 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF679Q8IYX0 411 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 GALNT4Q8N4A0 578 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 TMEM163Q8TC26 289 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 ITPKCQ96DU7 683 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 CNN2Q99439 309 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 GABARAPL3Q9BY60 117 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 UFSP2Q9NUQ7 469 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 FAM206AQ9NX38 181 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 ANK2Q01484 3957 aa13.39□□□□□ -0.27
CCDC88C-209ENST00000554872 ARHGAP32A7KAX9 2087 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 TRAV38-1A0A0B4J264 116 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 OOEPA6NGQ2 149 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF205O95201 554 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 VENTXO95231 258 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 IGLV3-1P01715 115 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms