RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 OTCP00480 354 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 HLA-DQB1P01920 261 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 KLK1P06870 262 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 CRYGCP07315 174 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 STAG3L2P0CL84 134 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 C1GALT1C1LP0DN25 315 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 THRAP10827 490 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 MUC1P15941 1255 aaPredicted RBP2.44□□□□□ -2.02
VPS29-205ENST00000548539 CPN2P22792 545 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 HTR1DP28221 377 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 CXCL12P48061 93 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 UBE2E1P51965 193 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 CARD18P57730 90 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 PITPNAQ00169 270 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 SIGLEC14Q08ET2 396 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 C16orf72Q14CZ0 275 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 C5orf47Q569G3 176 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 RNASE13Q5GAN3 156 aaKnown RBP2.44□□□□□ -2.02
VPS29-205ENST00000548539 SLC30A8Q8IWU4 369 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 C19orf18Q8NEA5 215 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 TTLQ8NG68 377 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 LILRB4Q8NHJ6 448 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 LINC01560Q8TB33 94 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 RXFP2Q8WXD0 754 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 ESR2Q92731 530 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 TFGQ92734 400 aaPredicted RBP2.44□□□□□ -2.02
VPS29-205ENST00000548539 CDS1Q92903 461 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 UBE2E2Q96LR5 201 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 C8orf17Q9NRJ1 99 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 CYTL1Q9NRR1 136 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 RBFOX1Q9NWB1 397 aaKnown RBP2.44□□□□□ -2.02
VPS29-205ENST00000548539 IFNKQ9P0W0 207 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 ZNF835Q9Y2P0 537 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 HES2Q9Y543 173 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 RFNGQ9Y644 331 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 ATRXP46100 2492 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 C7orf66A4D0T2 115 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 OR5H1A6NKK0 313 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 CTNSO60931 367 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 CCNE2O96020 404 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 CSTAP01040 98 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 IGLV3-25P01717 112 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 ME2P23368 584 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 OR2B8PP59922 312 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 PPIDQ08752 370 aaKnown RBP2.43□□□□□ -2.02
VPS29-205ENST00000548539 CDC20Q12834 499 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 PNOCQ13519 176 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 OR1Q1Q15612 314 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 HSP90AA4PQ58FG1 418 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 OPN5Q6U736 354 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 ASCL4Q6XD76 172 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 ZNF709Q8N972 641 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 OR8D1Q8WZ84 308 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 TMEM159Q96B96 161 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 KCNS1Q96KK3 526 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 OR10C1Q96KK4 312 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 RNF5Q99942 180 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 RSG1Q9BU20 258 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 CHID1Q9BWS9 393 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 TDRD3Q9H7E2 651 aaKnown RBP2.43□□□□□ -2.02
VPS29-205ENST00000548539 CES1P1Q9UKY3 287 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 ZNF257Q9Y2Q1 563 aa2.43□□□□□ -2.02
VPS29-205ENST00000548539 TMEM150BA6NC51 233 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 TNFRSF11BO00300 401 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 EIF1BO60739 113 aaKnown RBP2.42□□□□□ -2.02
VPS29-205ENST00000548539 MPZL1O95297 269 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 ETHE1O95571 254 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 GCGP01275 180 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 IGHV3-11P01762 117 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 DCNP07585 359 aaKnown RBP2.42□□□□□ -2.02
VPS29-205ENST00000548539 GFAPP14136 432 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 PTNP21246 168 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 ARL2P36404 184 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 EIF1P41567 113 aaKnown RBP2.42□□□□□ -2.02
VPS29-205ENST00000548539 MOBPQ13875 183 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 PIGHQ14442 188 aaPredicted RBP2.42□□□□□ -2.02
VPS29-205ENST00000548539 C6orf183Q5T699 404 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 ZNF880Q6PDB4 577 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 SHISA6Q6ZSJ9 500 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 SLC35D2Q76EJ3 337 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 NDUFAF7Q7L592 441 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 OR2W3Q7Z3T1 314 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 MDP1Q86V88 176 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 ARHGAP18Q8N392 663 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 OR4K3Q96R72 315 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 GABRG3Q99928 467 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 KCNS3Q9BQ31 491 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 TBL1YQ9BQ87 522 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 OSBPL11Q9BXB4 747 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 C1orf198Q9H425 327 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 ARMC7Q9H6L4 198 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 TMEM100Q9NV29 134 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 FLVCR2Q9UPI3 526 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 FARSAQ9Y285 508 aaKnown RBP2.42□□□□□ -2.02
VPS29-205ENST00000548539 OR51B2Q9Y5P1 312 aa2.42□□□□□ -2.02
VPS29-205ENST00000548539 TNIKQ9UKE5 1360 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 IGHV3-72A0A0B4J1Y9 119 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 A0A0B4J2E0 115 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 A0A1W2PRF3 423 aa2.41□□□□□ -2.02
VPS29-205ENST00000548539 A0A1W2PRM7 423 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms